MAFFT-DASH: integrated protein sequence and structural alignment

John Rozewicki, Songling Li, Karlou Mar Amada, +2

Nucleic Acids Research

An infectivity-enhancing site on the SARS-CoV-2 spike protein targeted by antibodies

Yafei Liu, Wai Tuck Soh, Jun-ichi Kishikawa, +34

Cell

Vaccine TargetViral PathogenesisImmunologyInfectivity-enhancing SiteVirology +5

TLR4-induced NF-κB and MAPK signaling regulate the IL-6 mRNA stabilizing protein Arid5a

Kishan Kumar Nyati, Kazuya Masuda, Mohammad Mahabub-Uz Zaman, +9

Nucleic Acids Research

ImmunologyImmune RegulationInnate ImmunityImmune SystemImmune Dysregulation +24

Improved Prediction of Lysine Acetylation by Support Vector Machines

Songling Li, Hong Li, Mingfa Li, +3

Protein and Peptide Letters

A model for Escherichia coli chromosome packaging supports transcription factor-induced DNA domain formation

Miriam Fritsche, Songling Li, Dieter W. Heermann, +1

Nucleic Acids Research

EngineeringGeneticsMolecular BiologyGene Regulatory NetworkTranscription Factor Genes +19

Repertoire Builder: high-throughput structural modeling of B and T cell receptors

Dimitri Schritt, Songling Li, John Rozewicki, +5

Molecular Systems Design & Engineering

Three-dimensional ModelsEngineeringAdaptive Immune SystemT-regulatory CellRepertoire Builder +20

Quantifying sequence and structural features of protein–RNA interactions

Songling Li, Kazuo Yamashita, Karlou Mar Amada, +1

Nucleic Acids Research

Structural BioinformaticsBiomolecular Structure PredictionMolecular BiologyProteomicsInteractomics +15

Structural basis for the assembly of the Ragulator-Rag GTPase complex

Ryo Yonehara, Shigeyuki Nada, Tomokazu NAKAI, +10

Nature Communications

An engineered ACE2 decoy neutralizes the SARS-CoV-2 Omicron variant and confers protection against infection in vivo

Nariko Ikemura, Shunta Taminishi, Tohru Inaba, +15

Science Translational Medicine

Confers ProtectionEfficient EvasionImmunologyViral PathogenesisViral Structural Protein +14

Dual signal-based electrochemical aptasensor for simultaneous detection of Lead(II) and Mercury(II) in environmental water samples

Feng Gao, Songling Li, Philip Antwi-Mensah, +2

Biosensors and Bioelectronics

Chemical EngineeringEnvironmental ChemistryEnvironmental MonitoringSimultaneous DetectionEngineering +9