An integrated encyclopedia of DNA elements in the human genome

Ian Dunham, Anshul Kundaje, Shelley Force Aldred, +440

The Journal of the American Medical Association (JAMA) Network (American Medical Association)

The Transcriptional Landscape of the Yeast Genome Defined by RNA Sequencing

Ugrappa Nagalakshmi, Zhong Wang, Karl Waern, +4

Science

GeneticsTranscriptomics TechnologyMolecular GeneticsTranscriptional LandscapeGenomics +17

ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia

Stephen G. Landt, Georgi K. Marinov, Anshul Kundaje, +44

Genome Research

Histone ModificationsEngineeringElectronic Design AutomationGeneticsComputer Architecture +24

<i>Porphyromonas gingivalis</i> in Alzheimer’s disease brains: Evidence for disease causation and treatment with small-molecule inhibitors

Stephen S. Dominy, Casey Lynch, Florian Ermini, +22

Science Advances

Architecture of the human regulatory network derived from ENCODE data

Mark Gerstein, Anshul Kundaje, Manoj Hariharan, +52

Nature

Extensive Promoter-Centered Chromatin Interactions Provide a Topological Basis for Transcription Regulation

Guoliang Li, Xiaoan Ruan, Raymond K. Auerbach, +33

Cell

ChromatinTranscriptional RegulationFunctional GenomicsChromatin RemodelingNatural Sciences +11

AlleleSeq: analysis of allele‐specific expression and binding in a network framework

Joel Rozowsky, Alexej Abyzov, Jing Wang, +11

Molecular Systems Biology

The Cancer Stem Cell Marker Aldehyde Dehydrogenase Is Required to Maintain a Drug-Tolerant Tumor Cell Subpopulation

Debasish Raha, Timothy R. Wilson, Jing Peng, +6

Cancer Research

A Major Epigenetic Programming Mechanism Guided by piRNAs

Xiao Huang, Hang Yin, Sarah Sweeney, +3

Developmental Cell

ChromatinGeneticsGene ExpressionSmall RnaSystems Biology +3

Genomic binding profiles of functionally distinct RNA polymerase III transcription complexes in human cells

Zarmik Moqtaderi, Jie Wang, Debasish Raha, +4

Nature Structural & Molecular Biology

Transcriptional RegulationFunctional GenomicsHuman CellsNatural SciencesRna Biology +9