A deep proteome and transcriptome abundance atlas of 29 healthy human tissues

Dongxue Wang, Basak Eraslan, Thomas Wieland, +16

Molecular Systems Biology

B cell genomics behind cross-neutralization of SARS-CoV-2 variants and SARS-CoV

Johannes F. Scheid, Christopher O. Barnes, Basak Eraslan, +33

Cell

Viral EvolutionAdaptive Immune SystemB Cell GenomicsImmunologyVirology +4

Quantification and discovery of sequence determinants of protein‐per‐mRNA amount in 29 human tissues

Basak Eraslan, Dongxue Wang, Mirjana Gušić, +10

Molecular Systems Biology

Scalable genetic screening for regulatory circuits using compressed Perturb-seq

Douglas Yao, Loïc Binan, Jon Bezney, +8

Nature Biotechnology

A deep proteome and transcriptome abundance atlas of 29 healthy human tissues

Dongxue Wang, Basak Eraslan, Thomas Wieland, +16

Transcriptomics TechnologyProtein QuantitiesGene Expression ProfilingProteomic TechnologyTranscriptional Regulation +18

HLA-II immunopeptidome profiling and deep learning reveal features of antigenicity to inform antigen discovery

Martin Stražar, Jihye Park, Jennifer G. Abelin, +11

Immunity

HistocompatibilityAllergyHuman Leukocyte AntigenAutoimmune DiseaseHla Immunogenetics +9

Predicting cellular responses to perturbation across diverse contexts with State

Abhinav Adduri, Dhruv Gautam, Beatrice Bevilacqua, +16

Remodeling of colon plasma cell repertoire within ulcerative colitis patients

Johannes F. Scheid, Basak Eraslan, Andrew Hudak, +15

The Journal of Experimental Medicine

InflammationChronic Inflammatory DiseasesB Cell ClonesDysbiosisPlasma Cells +13

Systematically characterizing the roles of E3-ligase family members in inflammatory responses with massively parallel Perturb-seq

Basak Eraslan, Olena Kuksenko, Kushal K. Dey, +18

Family MembersInnate Immune SystemImmune RegulationImmunologyE3 Ligases +29

MorPhiC Consortium: towards functional characterization of all human genes

Mazhar Adli, Laralynne Przybyla, Tony Burdett, +105

Nature