Single-cell transcriptomic atlas of the human endometrium during the menstrual cycle

Wanxin Wang, Felipe Vilella, Pilar Alamá, +6

Nature Medicine

Single-cell Transcriptomic AtlasCell DivisionSingle Cell SequencingHuman EndometriumMedicine +9

Single-cell transcriptomes and whole-brain projections of serotonin neurons in the mouse dorsal and median raphe nuclei

Jing Ren, Alina Isakova, Drew Friedmann, +14

eLife

Median Raphe NucleiNeurotransmitterTranscriptomics TechnologyNeurotransmissionCellular Neurobiology +17

Systematic dissection of genomic features determining transcription factor binding and enhancer function

Sharon R. Grossman, Xiaolan Zhang, Li Wang, +9

Proceedings of the National Academy of Sciences

GeneticsGene Regulatory NetworkGenomicsGene RecognitionGenomic Features +21

Topology and Dynamics of the Zebrafish Segmentation Clock Core Circuit

Christian Schröter, Saúl Ares, Luis G. Morelli, +8

PLoS Biology

SMiLE-seq identifies binding motifs of single and dimeric transcription factors

Alina Isakova, Romain Groux, Michaël Imbeault, +7

Nature Methods

Sequence MotifTranscriptional RegulationFunctional GenomicsNatural SciencesGenetics +10

A mouse tissue atlas of small noncoding RNA

Alina Isakova, Tobias Fehlmann, Andreas Keller, +1

Proceedings of the National Academy of Sciences

Integrative Genomics Identifies the Corepressor SMRT as a Gatekeeper of Adipogenesis through the Transcription Factors C/EBPβ and KAISO

Sunil K. Raghav, Sebastian M. Waszak, Irina Krier, +4

Molecular Cell

Transcriptional RegulationDevelopmental BiologyMedicineGeneticsGene Regulation +8

Single-cell quantification of a broad RNA spectrum reveals unique noncoding patterns associated with cell types and states

Alina Isakova, Norma Neff, Stephen R. Quake

Proceedings of the National Academy of Sciences

Automated protein-DNA interaction screening of Drosophila regulatory elements

Korneel Hens, Jean‐Daniel Feuz, Alina Isakova, +6

Nature Methods

Functional GenomicsInteractomicsGeneticsComputational BiologyMolecular Genetics +5

Characterizing expression changes in noncoding RNAs during aging and heterochronic parabiosis across mouse tissues

Viktoria Wagner, Fabian Kern, Oliver Hãhn, +15

Nature Biotechnology