Jiayu Shang

PhaTYP: predicting the lifestyle for bacteriophages using BERT

Jiayu Shang, Xubo Tang, Yanni Sun · Briefings in Bioinformatics · 2022 · 189 citations · Full text

Functional Genomics, Engineering, Bioinformatics Database +14

Bacteriophage classification for assembled contigs using graph convolutional network

Jiayu Shang, Jing‐Zhe Jiang, Yanni Sun · Bioinformatics · 2021 · 143 citations · Full text

Virus classification for viral genomic fragments using PhaGCN2

Jing‐Zhe Jiang, Wen-Guang Yuan, Jiayu Shang et al. · Briefings in Bioinformatics · 2022 · 124 citations

PhaBOX: a web server for identifying and characterizing phage contigs in metagenomic data

Jiayu Shang, Cheng Peng, Herui Liao et al. · Bioinformatics Advances · 2023 · 100 citations · Full text

PLASMe: a tool to identify PLASMid contigs from short-read assemblies using transformer

Xubo Tang, Jiayu Shang, Yongxin Ji et al. · Nucleic Acids Research · 2023 · 84 citations · Full text

Engineering, Short-read Assemblies, Mobile Genetic Elements +15