Data reduction for spectral clustering to analyze high throughput flow cytometry data

Habil Zare, Parisa Shooshtari, Arvind Gupta, +1

BMC Bioinformatics

Correlation analysis of intracellular and secreted cytokines via the generalized integrated mean fluorescence intensity

Parisa Shooshtari, Edgardo S. Fortuno, Darren Blimkie, +4

Cytometry Part A

Leveraging Public Single-Cell and Bulk Transcriptomic Datasets to Delineate MAIT Cell Roles and Phenotypic Characteristics in Human Malignancies

Tony Yao, Parisa Shooshtari, S. M. Mansour Haeryfar

Frontiers in Immunology

Integrative Genetic and Epigenetic Analysis Uncovers Regulatory Mechanisms of Autoimmune Disease

Parisa Shooshtari, Hailiang Huang, Chris Cotsapas

The American Journal of Human Genetics

ChromatinImmunogeneticsAutoimmune DiseaseAutoantibody ProductionDisease Etiology +10

CReSCENT: CanceR Single Cell ExpressioN Toolkit

Suluxan Mohanraj, J. Javier Díaz-Mejía, Martin D. Pham, +16

Nucleic Acids Research

EngineeringPathologyTranscriptomics TechnologyTumor BiologySingle Cell Sequencing +18

Removing Ocular Artifacts From Eeg Signals Using Adaptive Filtering And Armax Modeling

Parisa Shooshtari, Gelareh Mohammadi, Behnam Molaee Ardekani, +1

Infoscience (Ecole Polytechnique Fédérale de Lausanne)

EngineeringEeg SignalElectroencephalographyNoise ReductionAdaptive Filtering +17

Evaluation of single-cell RNAseq labelling algorithms using cancer datasets

Erik Christensen, Ping Luo, Andrei L. Turinsky, +8

Briefings in Bioinformatics

Removing Ocular Artifacts From Eeg Signals Using Adaptive Filtering And Armax Modeling

Parisa Shooshtari, Gelareh Mohamadi, Behnam Molaee Ardekani, +1

Zenodo (CERN European Organization for Nuclear Research)

EngineeringEeg SignalElectroencephalographyNoise ReductionAdaptive Filtering +17

Network Analysis of Genome-Wide Selective Constraint Reveals a Gene Network Active in Early Fetal Brain Intolerant of Mutation

Jinmyung Choi, Parisa Shooshtari, Kaitlin E. Samocha, +2

PLoS Genetics

GeneticsGenetic EpidemiologyNetwork AnalysisDisease Gene IdentificationGene Regulatory Network +22

Flow cytometry data standards

Josef Špidlen, Parisa Shooshtari, Tobias R. Kollmann, +1

BMC Research Notes