NetMHCpan-4.1 and NetMHCIIpan-4.0: improved predictions of MHC antigen presentation by concurrent motif deconvolution and integration of MS MHC eluted ligand data

Birkir Reynisson, Bruno Alvarez, Sinu Paul, +2

Nucleic Acids Research

HistocompatibilityEngineeringConcurrent Motif DeconvolutionMhc ClassMhc Antigen Presentation +19

NetMHCpan-4.0: Improved Peptide–MHC Class I Interaction Predictions Integrating Eluted Ligand and Peptide Binding Affinity Data

Vanessa Jurtz, Sinu Paul, Massimo Andreatta, +3

The Journal of Immunology

Mhc ClassImmunologyMolecular BiologyAntigen ProcessingPeptide Science +14

IEDB-AR: immune epitope database—analysis resource in 2019

Sandeep Kumar Dhanda, Swapnil Mahajan, Sinu Paul, +10

Nucleic Acids Research

Iedb-ar UpdateAutoimmune DiseaseBioinformatics DatabaseBiological DatabaseMedicine +12

HLA Class I Alleles Are Associated with Peptide-Binding Repertoires of Different Size, Affinity, and Immunogenicity

Sinu Paul, Daniela Weiskopf, Michael A. Angelo, +3

The Journal of Immunology

HistocompatibilityHlaGeneticsHla ImmunogeneticsImmunology +19

TepiTool: A Pipeline for Computational Prediction of T Cell Epitope Candidates

Sinu Paul, John Sidney, Alessandro Sette, +1

Current Protocols in Immunology

HistocompatibilityEngineeringAdaptive Immune SystemImmunodeficienciesT-regulatory Cell +25

Development and validation of a broad scheme for prediction of HLA class II restricted T cell epitopes

Sinu Paul, Cecilia S. Lindestam Arlehamn, Thomas J. Scriba, +8

Journal of Immunological Methods

HistocompatibilityHlaBroad SchemeAutoimmune DiseaseHuman Leukocyte Antigen +13

Prior Dengue Virus Exposure Shapes T Cell Immunity to Zika Virus in Humans

Alba Grifoni, John Pham, John Sidney, +38

Journal of Virology

The Human CD8 ⁺ T Cell Responses Induced by a Live Attenuated Tetravalent Dengue Vaccine Are Directed against Highly Conserved Epitopes

Daniela Weiskopf, Michael A. Angelo, Derek J. Bangs, +10

Journal of Virology

A Quantitative Analysis of Complexity of Human Pathogen-Specific CD4 T Cell Responses in Healthy M. tuberculosis Infected South Africans

Cecilia S. Lindestam Arlehamn, Denise M. McKinney, Chelsea Carpenter, +11

PLoS Pathogens

Predicting HLA CD4 Immunogenicity in Human Populations

Sandeep Kumar Dhanda, Edita Karosiene, Lindy Edwards, +8

Frontiers in Immunology