Quantification, Dynamic Visualization, and Validation of Bias in ATAC-Seq Data with ataqv

Peter Orchard, Yasuhiro Kyono, John Hensley, +2

Cell Systems

Deciphering the Regulatory Logic of an Ancient, Ultraconserved Nuclear Receptor Enhancer Module

Pia Bagamasbad, Ronald M. Bonett, Laurent M. Sachs, +7

Molecular Endocrinology

Molecular RegulationGeneticsMolecular BiologyNuclear Hormone ReceptorsGene Regulatory Network +19

STARRPeaker: uniform processing and accurate identification of STARR-seq active regions

Donghoon Lee, Manman Shi, Jennifer Moran, +8

Genome biology

Visualizing stimulus convergence in amygdala neurons during associative learning

Sabiha K. Barot, Yasuhiro Kyono, Emily W. Clark, +1

Proceedings of the National Academy of Sciences

Brain MechanismNeural RecodingNeurolinguisticsInformation ConvergenceAffective Neuroscience +15

Liganded Thyroid Hormone Receptors Transactivate the DNA Methyltransferase 3a Gene in Mouse Neuronal Cells

Yasuhiro Kyono, Arasakumar Subramani, Preeti Ramadoss, +3

Endocrinology

Histone ModificationsMouse Neuronal CellsEpigenetic ChangeGeneticsDna Methylation +20

Chromatin information content landscapes inform transcription factor and DNA interactions

Ricardo D’Oliveira Albanus, Yasuhiro Kyono, John Hensley, +4

Nature Communications

Developmental and Thyroid Hormone Regulation of the DNA Methyltransferase 3a Gene in Xenopus Tadpoles

Yasuhiro Kyono, Laurent M. Sachs, Patrice Bilesimo, +2

Endocrinology

Thyroid Hormone Induces DNA Demethylation in <i>Xenopus</i> Tadpole Brain

Samhitha Raj, Yasuhiro Kyono, Christopher J. Sifuentes, +3

Endocrinology

ChromatinDevelopmental BiologyDevelopmental GeneticsGeneticsEpigenetic Change +11

The Atypical Antipsychotic Quetiapine Promotes Multiple Antibiotic Resistance in Escherichia coli

Yasuhiro Kyono, Lori Ellezian, YueYue Hu, +5

Journal of Bacteriology

Global dynamics of stage-specific transcription factor binding during thymocyte development

Tomonori Hosoya, Ricardo D’Oliveira Albanus, John Hensley, +5

Scientific Reports