Mohammed Alser

Critical Assessment of Metagenome Interpretation: the second round of challenges

Fernando Meyer, Adrian Fritz, Zhi-Luo Deng et al. · Nature Methods · 2022 · 366 citations · Full text

GRIM-Filter: Fast seed location filtering in DNA read mapping using processing-in-memory technologies

Jeremie S. Kim, Damla Senol Cali, Hongyi Xin et al. · Repository for Publications and Research Data (ETH Zurich) · 2018 · 158 citations · Full text

GateKeeper: a new hardware architecture for accelerating pre-alignment in DNA short read mapping

Mohammed Alser, Hasan Hassan, Hongyi Xin et al. · Bioinformatics · 2017 · 108 citations · Full text

GenASM: a high-performance, low-power approximate string matching acceleration framework for genome sequence analysis

Gurpreet S. Kalsi, Zülal Bingöl, Can Fırtına et al. · Bilkent University Institutional Repository (Bilkent University) · 2021 · 106 citations

Engineering, Genetics, Genomics +18

Shouji: a fast and efficient pre-alignment filter for sequence alignment

Mohammed Alser, Hasan Hassan, Akash Kumar et al. · Bioinformatics · 2019 · 78 citations · Full text