Damla Senol Cali

GRIM-Filter: Fast seed location filtering in DNA read mapping using processing-in-memory technologies

Jeremie S. Kim, Damla Senol Cali, Hongyi Xin et al. · Repository for Publications and Research Data (ETH Zurich) · 2018 · 158 citations · Full text

Life Sciences, Bioinformatics, Genetics +14

FPGA-Based Near-Memory Acceleration of Modern Data-Intensive Applications

Gagandeep Singh, Mohammed Alser, Damla Senol Cali et al. · IEEE Micro · 2021 · 71 citations · Full text

Engineering, Computer Engineering, Computer Science +13

GenStore: a high-performance in-storage processing system for genome sequence analysis

Nika Mansouri Ghiasi, Jisung Park, Harun Mustafa et al. · 2022 · 68 citations

Life Sciences, Bioinformatics, High-performance Computing +15

Apollo: a sequencing-technology-independent, scalable and accurate assembly polishing algorithm

Jeremie S. Kim, Mohammed Alser, Damla Senol Cali et al. · Bioinformatics · 2020 · 64 citations · Full text

Life Sciences, Bioinformatics, Biology +16

Demystifying Complex Workload-DRAM Interactions

Saugata Ghose, Tianshi Li, Nastaran Hajinazar et al. · 2019 · 56 citations · Full text

Engineering, Computer Engineering, Computer Science +17