José M. Fernández

Genetic Drivers of Epigenetic and Transcriptional Variation in Human Immune Cells

Lu Chen, Bing Ge, Francesco Paolo Casale et al. · Cell · 2016 · 746 citations · Full text

Reductive genome evolution in <i>Buchnera aphidicola</i>

Roeland C. H. J. van Ham, Judith Kamerbeek, Carmen Palacios et al. · Proceedings of the National Academy of Sciences · 2003 · 522 citations · Full text

The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens

Naihui Zhou, Yuxiang Jiang, Timothy Bergquist et al. · Genome biology · 2019 · 459 citations · Full text

An expanded evaluation of protein function prediction methods shows an improvement in accuracy

Yuxiang Jiang, Tal Oron, Wyatt T. Clark et al. · Genome biology · 2016 · 438 citations · Full text

Systematic assessment of long-read RNA-seq methods for transcript identification and quantification

Francisco J. Pardo-Palacios, Dingjie Wang, Fairlie Reese et al. · Nature Methods · 2024 · 174 citations · Full text