Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition)¹

Daniel J. Klionsky, Amal Kamal Abdel‐Aziz, Sara Abdelfatah, +1267

Autophagy

Accurate proteome-wide missense variant effect prediction with AlphaMissense

Jun Cheng, Guido Novati, Joshua Pan, +13

Science

GeneticsGenetic EpidemiologyGenomicsGenome-wide Association StudyBiostatistics +14

Specific identification and quantification of circular RNAs from sequencing data

Jun Cheng, Franziska Metge, Christoph Dieterich

Bioinformatics

MMSplice: modular modeling improves the predictions of genetic variant effects on splicing

Jun Cheng, Thi Yen Duong Nguyen, Kamil J. Cygan, +4

Genome biology

An Insulin-Sensitive Circular RNA that Regulates Lifespan in Drosophila

Carina Marianne Weigelt, Rohan Sehgal, Luke S. Tain, +6

Molecular Cell

Lifespan ExtensionSystems BiologyEngineeringCircular RnasLongevity +12

Lower Serum Levels of miR-29c-3p and miR-19b-3p as Biomarkers for Alzheimer’s Disease

Yuquan Wu, Juan Xu, Jing Xu, +5

The Tohoku Journal of Experimental Medicine

<i>Cis</i> -regulatory elements explain most of the mRNA stability variation across genes in yeast

Jun Cheng, Kerstin C. Maier, Žiga Avsec, +2

RNA

Artificial intelligence predicts the immunogenic landscape of SARS-CoV-2 leading to universal blueprints for vaccine designs

Brandon Malone, Boris Simovski, Clément Moliné, +8

Scientific Reports

AlphaGenome: advancing regulatory variant effect prediction with a unified DNA sequence model

Žiga Avsec, Natasha S. Latysheva, Jun Cheng, +23

EngineeringNeurogenomicsGeneticsGene CharacterizationGenomics +20

BERTMHC: improved MHC–peptide class II interaction prediction with transformer and multiple instance learning

Jun Cheng, Kaïdre Bendjama, Karola Rittner, +1

Bioinformatics