Origins and evolutionary genomics of the 2009 swine-origin H1N1 influenza A epidemic

Gavin J. D. Smith, Dhanasekaran Vijaykrishna, Justin Bahl, +9

Nature

SARS-CoV-2 Omicron is an immune escape variant with an altered cell entry pathway

Brian J. Willett, Joe Grove, Oscar A. MacLean, +683

Nature Microbiology

Establishment and cryptic transmission of Zika virus in Brazil and the Americas

Nuno R. Faria, Josh Quick, Ingra Morales Claro, +70

Nature

Vector-borne PathogenCryptic TransmissionVirus EpidemiologyEmergent VirusVirology +3

Establishment and lineage dynamics of the SARS-CoV-2 epidemic in the UK

Louis du Plessis, John T. McCrone, Alexander E. Zarebski, +23

Science

Endemic Dengue Associated with the Co-Circulation of Multiple Viral Lineages and Localized Density-Dependent Transmission

Jayna Raghwani, Andrew Rambaut, Edward C. Holmes, +7

PLoS Pathogens

Genome-wide evolutionary dynamics of influenza B viruses on a global scale

Pinky Langat, Jayna Raghwani, Gytis Dudas, +11

PLoS Pathogens

Influenza BGlobal-scale EpidemiologyVirus EpidemiologyGeneticsInfluenza B Viruses +15

Purifying Selection Determines the Short-Term Time Dependency of Evolutionary Rates in SARS-CoV-2 and pH1N1 Influenza

Mahan Ghafari, Louis du Plessis, Jayna Raghwani, +4

Molecular Biology and Evolution

Phylogeography and epidemic history of hepatitis C virus genotype 4 in Africa

James Iles, Jayna Raghwani, G. L. Abby Harrison, +14

Virology

A Molecular-Level Account of the Antigenic Hantaviral Surface

Sai Li, Ilona Rissanen, Antra Zeltina, +6

Cell Reports

The Evolution and Transmission of Epidemic GII.17 Noroviruses

Jing Lu, Lin Fang, Huanying Zheng, +13

The Journal of Infectious Diseases