Nad’a Špačková

A systematic molecular dynamics study of nearest-neighbor effects on base pair and base pair step conformations and fluctuations in B-DNA

Richard Lavery, K. Zakrzewska, David L. Beveridge et al. · Nucleic Acids Research · 2009 · 309 citations · Full text

μABC: a systematic microsecond molecular dynamics study of tetranucleotide sequence effects in B-DNA

Marco Pasi, John H. Maddocks, David L. Beveridge et al. · Nucleic Acids Research · 2014 · 213 citations · Full text

Engineering, Structural Bioinformatics, Genetics +18

Nanosecond Molecular Dynamics Simulations of Parallel and Antiparallel Guanine Quadruplex DNA Molecules

Nad’a Špačková, Imre Berger · Journal of the American Chemical Society · 1999 · 173 citations

Dna Nanotechnology, Engineering, Ion Channel +11

Molecular Dynamics Simulations and Thermodynamics Analysis of DNA−Drug Complexes. Minor Groove Binding between 4‘,6-Diamidino-2-phenylindole and DNA Duplexes in Solution

Nad’a Špačková, Thomas E. Cheatham, Filip Ryjáček et al. · Journal of the American Chemical Society · 2003 · 158 citations

Formation Pathways of a Guanine-Quadruplex DNA Revealed by Molecular Dynamics and Thermodynamic Analysis of the Substates

Richard Štefl, Thomas E. Cheatham, Nad’a Špačková et al. · Biophysical Journal · 2003 · 137 citations · Full text

Chromatin, Dna Nanotechnology, Dna +12