Amy F. Chen

NEAT-seq: simultaneous profiling of intra-nuclear proteins, chromatin accessibility and gene expression in single cells

Amy F. Chen, Benjamin Parks, Arwa S. Kathiria et al. · Nature Methods · 2022 · 130 citations · Full text

Chromatin, Chromatin Accessibility, Functional Genomics +10

FOXD3 Regulates Pluripotent Stem Cell Potential by Simultaneously Initiating and Repressing Enhancer Activity

Raga Krishnakumar, Amy F. Chen, Marisol G. Pantovich et al. · Cell stem cell · 2016 · 110 citations · Full text

Stem Cell Biology, Repressing Enhancer Activity, Transcriptional Regulation +10

GRHL2-Dependent Enhancer Switching Maintains a Pluripotent Stem Cell Transcriptional Subnetwork after Exit from Naive Pluripotency

Amy F. Chen, Arthur Liu, Raga Krishnakumar et al. · Cell stem cell · 2018 · 110 citations · Full text

Transcriptional Regulation, Lineage Plasticity, Developmental Biology +8

Systematic discovery and perturbation of regulatory genes in human T cells reveals the architecture of immune networks

Jacob W. Freimer, Oren Shaked, Sahin Naqvi et al. · Nature Genetics · 2022 · 83 citations · Full text

Immune Networks, Autoimmune Disease, Systematic Discovery +11

Systematic discovery and perturbation of regulatory genes in human T cells reveals the architecture of immune networks

Jacob W. Freimer, Oren Shaked, Sahin Naqvi et al. · 2021 · 29 citations · Full text

T-regulatory Cell, Immunology, Immune Regulation +24