José Juan Almagro Armenteros

SignalP 5.0 improves signal peptide predictions using deep neural networks

José Juan Almagro Armenteros, Konstantinos D. Tsirigos, Casper Kaae Sønderby et al. · Nature Biotechnology · 2019 · 4.7K citations · Full text

Life Sciences, Bioinformatics, Molecular Biology +12

SignalP 6.0 predicts all five types of signal peptides using protein language models

Felix Teufel, José Juan Almagro Armenteros, Alexander Rosenberg Johansen et al. · Repository for Publications and Research Data (ETH Zurich) · 2022 · 2.1K citations · Full text

Life Sciences, Bioinformatics, Molecular Biology +17

DeepTMHMM predicts alpha and beta transmembrane proteins using deep neural networks

Jeppe Hallgren, Konstantinos D. Tsirigos, Mads Damgaard Pedersen et al. · bioRxiv (Cold Spring Harbor Laboratory) · 2022 · 1.5K citations · Full text

Life Sciences, Biochemistry, Bioinformatics +17

DeepLoc: prediction of protein subcellular localization using deep learning

José Juan Almagro Armenteros, Casper Kaae Sønderby, Søren Kaae Sønderby et al. · Bioinformatics · 2017 · 1.2K citations · Full text

Life Sciences, Biochemistry, Bioinformatics +14

Detecting sequence signals in targeting peptides using deep learning

José Juan Almagro Armenteros, Marco Salvatore, Olof Emanuelsson et al. · Life Science Alliance · 2019 · 1.1K citations · Full text

Life Sciences, Bioinformatics, Biology +17