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Genome Research

Disease-Associated Short Tandem Repeats Co-localize with Chromatin Domain Boundaries

James Sun, Linda Zhou, Daniel J. Emerson, +8

Cell

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Nature

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Detecting hierarchical genome folding with network modularity

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Nature Methods

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Three-dimensional genome restructuring across timescales of activity-induced neuronal gene expression

Jonathan A. Beagan, Elissa D. Pastuzyn, Lindsey R. Fernandez, +6

Nature Neuroscience

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LADL: light-activated dynamic looping for endogenous gene expression control

Ji Hun Kim, Mayuri Rege, Jacqueline A. Valeri, +8

Nature Methods

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Cohesin-mediated loop anchors confine the locations of human replication origins

Daniel J. Emerson, Peiyao A Zhao, Ashley L. Cook, +22

Nature

Spatially coordinated heterochromatinization of long synaptic genes in fragile X syndrome

Thomas Malachowski, Keerthivasan Raanin Chandradoss, Ravi Boya, +17

Cell

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Methods

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A subset of topologically associating domains fold into mesoscale core-periphery networks

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Scientific Reports

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