Identification of Functional Elements and Regulatory Circuits by <i>Drosophila</i> modENCODE

Sushmita Roy, Jason Ernst, Peter V. Kharchenko, +168

Science

Gut microbiome composition and function in experimental colitis during active disease and treatment-induced remission

Michelle Rooks, Patrick Veiga, Leslie Wardwell-Scott, +12

The ISME Journal

Chronic Inflammatory DiseasesGut Microbiome CompositionDysbiosisHost-microbe InteractionsImmunology +18

Targeted Investigation of the Neandertal Genome by Array-Based Sequence Capture

Hernán A. Burbano, Emily Hodges, Richard E. Green, +17

Science

High definition profiling of mammalian DNA methylation by array capture and single molecule bisulfite sequencing

Emily Hodges, Andrew D. Smith, Jude Kendall, +11

Genome Research

Epigenetic ChangeGeneticsDna MethylationDna AnalysisMolecular Biology +18

Hybrid selection of discrete genomic intervals on custom-designed microarrays for massively parallel sequencing

Emily Hodges, Michelle Rooks, Zhenyu Xuan, +5

Nature Protocols

Custom-designed MicroarraysNext-generation SequencingGeneticsComputational GenomicsComputational Biology +10

DNA Sudoku—harnessing high-throughput sequencing for multiplexed specimen analysis

Yaniv Erlich, Kenneth Chang, Assaf Gordon, +4

Genome Research

EngineeringGeneticsGenomicsHigh Throughput SequencingMolecular Ecology +15

QseC inhibition as an antivirulence approach for colitis-associated bacteria

Michelle Rooks, Patrick Veiga, Analise Z. Reeves, +12

Proceedings of the National Academy of Sciences

Molecular and Functional Characterization of Human Intestinal Organoids and Monolayers for Modeling Epithelial Barrier

Scott A. Jelinsky, Merel Derksen, Eric B. Bauman, +14

Inflammatory Bowel Diseases

Targeted resequencing of a genomic region influencing tameness and aggression reveals multiple signals of positive selection

Frank W. Albert, Emily Hodges, Jeffrey D. Jensen, +15

Heredity

BiologyGenomic RegionMedicineGeneticsEvolutionary Biology +9

Bacteria, food, and cancer

Michelle Rooks, Wendy S. Garrett

F1000 Biology Reports