Joseph Azofeifa

Enhancer RNA profiling predicts transcription factor activity

Joseph Azofeifa, Mary A. Allen, Josephina Hendrix et al. · Genome Research · 2018 · 144 citations · Full text

Bioinformatics, Enhancer Rna, Transcriptional Regulation +14

Prolonged Cre expression driven by the α-myosin heavy chain promoter can be cardiotoxic

Emily K. Pugach, Phillip A. Richmond, Joseph Azofeifa et al. · Journal of Molecular and Cellular Cardiology · 2015 · 117 citations · Full text

Cardiac Muscle, Transcriptional Regulation, Molecular Physiology +10

Genome-wide dose-dependent inhibition of histone deacetylases studies reveal their roles in enhancer remodeling and suppression of oncogenic super-enhancers

Gilson J. Sanchez, Phillip A. Richmond, Eric Bunker et al. · Nucleic Acids Research · 2017 · 99 citations · Full text

Histone Modifications, Epigenetic Change, Genetics +22

A generative model for the behavior of RNA polymerase

Joseph Azofeifa, Robin D. Dowell · Bioinformatics · 2016 · 76 citations · Full text

An Annotation Agnostic Algorithm for Detecting Nascent RNA Transcripts in GRO-Seq

Joseph Azofeifa, Mary A. Allen, Manuel E. Lladser et al. · IEEE/ACM Transactions on Computational Biology and Bioinformatics · 2016 · 23 citations · Full text

Engineering, Genetics, Molecular Biology +22