Construction of <i>Escherichia coli</i> K‐12 in‐frame, single‐gene knockout mutants: the Keio collection

Tomoya Baba, Takeshi Ara, Miki Hasegawa, +7

Molecular Systems Biology

BacteriologySingle‐gene Knockout MutantsMolecular BiologyMicrobiologyMolecular Microbiology +3

MassBank: a public repository for sharing mass spectral data for life sciences

Hisayuki Horai, Masanori Arita, Shigehiko Kanaya, +32

Journal of Mass Spectrometry

Complete set of ORF clones of Escherichia coli ASKA library (A Complete Set of E. coli K-12 ORF Archive): Unique Resources for Biological Research

Masanari Kitagawa, Takeshi Ara, Md Arifuzzaman, +4

DNA Research

Large-scale identification of protein–protein interaction of <i>Escherichia coli</i> K-12

Mohammad Arifuzzaman, Maki Maeda, Aya Itoh, +20

Genome Research

Genome‐wide analysis of deoxyadenosine methyltransferase‐mediated control of gene expression in <i>Escherichia coli</i>

Taku Oshima, Chieko Wada, Yuya Kawagoe, +5

Molecular Microbiology

ASTD: The Alternative Splicing and Transcript Diversity database

Gautier Koscielny, Vincent Le Texier, Chellappa Gopalakrishnan, +25

Genomics

Functional GenomicsGeneticsSequence AnalysisTranscriptomics TechnologyGenomics +4

Using Alu Elements as Polyadenylation Sites: A Case of Retroposon Exaptation

Chao Chen, Takeshi Ara, Daniel Gautheret

Molecular Biology and Evolution

Strand BiasGeneticsGenomic MechanismMolecular BiologyMolecular Genetics +14

KaPPA-View4: a metabolic pathway database for representation and analysis of correlation networks of gene co-expression and metabolite co-accumulation and omics data

Nozomu Sakurai, Takeshi Ara, Yoshiyuki Ogata, +17

Nucleic Acids Research

GeneticsMetabolomic ProfilingMolecular BiologyMetabolic NetworkMetabolic Pathway Database +18

FlavonoidSearch: A system for comprehensive flavonoid annotation by mass spectrometry

Nayumi Akimoto, Takeshi Ara, Daisuke Nakajima, +8

Scientific Reports

PolyphenolicsBiochemistryMedicineBioanalysisMass Spectrometry +12

Complete Nucleotide Sequence of Plasmid Rts1: Implications for Evolution of Large Plasmid Genomes

Takahiro Murata, Makoto Ohnishi, Takeshi Ara, +13

Journal of Bacteriology