Masahito Ohue

Community-Wide Assessment of Protein-Interface Modeling Suggests Improvements to Design Methodology

Sarel J. Fleishman, Timothy A. Whitehead, Eva‐Maria Strauch et al. · Journal of Molecular Biology · 2011 · 136 citations · Full text

Engineering, Interactomics, Protein Folding +11

MEGADOCK 4.0: an ultra–high-performance protein–protein docking software for heterogeneous supercomputers

Masahito Ohue, Takehiro Shimoda, Shuji Suzuki et al. · Bioinformatics · 2014 · 98 citations · Full text

Large-Scale Membrane Permeability Prediction of Cyclic Peptides Crossing a Lipid Bilayer Based on Enhanced Sampling Molecular Dynamics Simulations

Masatake Sugita, Satoshi Sugiyama, Takuya Fujie et al. · Journal of Chemical Information and Modeling · 2021 · 76 citations · Full text

Membrane Structure, Proteinlipid Interaction, Membrane Formation +14

Variational autoencoder-based chemical latent space for large molecular structures with 3D complexity

Toshiki Ochiai, Tensei Inukai, Manato Akiyama et al. · Communications Chemistry · 2023 · 73 citations · Full text

MEGADOCK: An All-to-All Protein-Protein Interaction Prediction System Using Tertiary Structure Data

Masahito Ohue, Yuri Matsuzaki, Nobuyuki Uchikoga et al. · Protein and Peptide Letters · 2013 · 71 citations · Full text