Benchmarking spatial clustering methods with spatially resolved transcriptomics data

Zhiyuan Yuan, Fangyuan Zhao, Senlin Lin, +5

Nature Methods

Functional GenomicsEngineeringSpatial TranscriptomicsSpatial Statistical AnalysisMedicine +8

SEAM is a spatial single nuclear metabolomics method for dissecting tissue microenvironment

Zhiyuan Yuan, Qiming Zhou, Lesi Cai, +12

Nature Methods

Cell DivisionMolecular Biological MethodMedicineMolecular BiologyNuclear Organization +5

Personalized real-time movie recommendation system: Practical prototype and evaluation

Jiang Zhang, Yufeng Wang, Zhiyuan Yuan, +1

Tsinghua Science & Technology

EngineeringMachine LearningComputational Social SciencePractical Recommendation SchemesInformation Retrieval +14

SODB facilitates comprehensive exploration of spatial omics data

Zhiyuan Yuan, Wentao Pan, Xuan Zhao, +6

Nature Methods

Spatial DatabasesData ScienceGeographyManagementSpatial Data Management +6

Spatial-ID: a cell typing method for spatially resolved transcriptomics via transfer learning and spatial embedding

Rongbo Shen, Lin Liu, Zihan Wu, +14

Nature Communications

EngineeringSpatial EmbeddingGeneticsTranscriptomics TechnologySpatial Omics +21

SPIRAL: integrating and aligning spatially resolved transcriptomics data across different experiments, conditions, and technologies

Tiantian Guo, Zhiyuan Yuan, Yan Pan, +4

Genome biology

Spatial and Temporal Characteristics of Road Networks and Urban Expansion

Guoliang Zhao, Xinqi Zheng, Zhiyuan Yuan, +1

Land

Urban Land UseUrban GeographySpatial NetworkUrban ModellingRoad Networks +10

MENDER: fast and scalable tissue structure identification in spatial omics data

Zhiyuan Yuan

Nature Communications

Janus membrane prepared via one step depositing coatings onto PVDF/PDMS membrane for simultaneous antiwetting and antifouling in DCMD

Hailan Ji, Mengqi Gu, Ganwei Zhang, +6

Desalination

Membrane StructureChemical EngineeringMembrane FormationSimultaneous AntiwettingPolymer Membrane +3

SOTIP is a versatile method for microenvironment modeling with spatial omics data

Zhiyuan Yuan, Yisi Li, Minglei Shi, +4

Nature Communications

Environmental MonitoringEngineeringVersatile MethodDiverse ScalesEcological Modelling +17