On the origin and evolutionary consequences of gene body DNA methylation

Adam J. Bewick, Lexiang Ji, Chad E. Niederhuth, +16

Proceedings of the National Academy of Sciences

Epigenetic ChangeGeneticsDna MethylationGenomic MechanismMolecular Genetics +16

Chromosome-level assembly of<i>Arabidopsis thaliana</i>L<i>er</i>reveals the extent of translocation and inversion polymorphisms

Luís Zapata, Jia Ding, Eva‐Maria Willing, +8

Proceedings of the National Academy of Sciences

Plant GeneticsInversion PolymorphismsGeneticsMolecular GeneticsGenomics +20

Mutation identification by direct comparison of whole-genome sequencing data from mutant and wild-type individuals using k-mers

Karl Nordström, Maria C. Albani, Geo Velikkakam James, +6

Nature Biotechnology

Genetic AnalysisSequencingDirect ComparisonMedicineGenetics +12

Improving and correcting the contiguity of long-read genome assemblies of three plant species using optical mapping and chromosome conformation capture data

Wen‐Biao Jiao, Gonzalo Garcia Accinelli, Benjamin Hartwig, +15

Genome Research

Fast Isogenic Mapping-by-Sequencing of Ethyl Methanesulfonate-Induced Mutant Bulks      

Benjamin Hartwig, Geo Velikkakam James, Kathryn Konrad, +2

PLANT PHYSIOLOGY

EngineeringGeneticsMolecular BiologyGenomicsFast Isogenic Mapping-by-sequencing +19

Complementary Activities of TELOMERE REPEAT BINDING Proteins and Polycomb Group Complexes in Transcriptional Regulation of Target Genes

Yue Zhou, Benjamin Hartwig, Geo Velikkakam James, +2

The Plant Cell

GeneticsMolecular BiologyTarget GenesMolecular GeneticsGene Regulatory Network +18

cDNA Library Enrichment of Full Length Transcripts for SMRT Long Read Sequencing

Maria Cartolano, Bruno Hüettel, Benjamin Hartwig, +2

PLoS ONE

Plant GeneticsGeneticsMolecular BiologyTranscriptomics TechnologyGenomics +21

Interspecies association mapping links reduced CG to TG substitution rates to the loss of gene-body methylation

Christiane Kiefer, Eva‐Maria Willing, Wen‐Biao Jiao, +6

Nature Plants

Genome-wide Association StudyEpigenetic ChangeGeneticsDna MethylationGenetic Epidemiology +10

Ctf4-related protein recruits LHP1-PRC2 to maintain H3K27me3 levels in dividing cells in <i>Arabidopsis thaliana</i>

Yue Zhou, Emmanuel Tergemina, Haitao Cui, +5

Proceedings of the National Academy of Sciences

On the Origin and Evolutionary Consequences of Gene Body DNA Methylation

Adam J. Bewick, Lexiang Ji, Chad E. Niederhuth, +16

Eutrema SalsugineumEpigenetic ChangeGeneticsDna MethylationGenomic Mechanism +20