The<i>Pseudomonas aeruginosa</i>Pan-Genome Provides New Insights on Its Population Structure, Horizontal Gene Transfer, and Pathogenicity

Luca Freschi, Antony T. Vincent, Julie Jeukens, +6

Genome Biology and Evolution

Microbial PathogensGeneticsBacterial PathogensVirulence GenesInfection Control +16

Clinical utilization of genomics data produced by the international Pseudomonas aeruginosa consortium

Luca Freschi, Julie Jeukens, Irena Kukavica‐Ibrulj, +54

Frontiers in Microbiology

Virulence GenesPseudomonas Genome EvolutionAntimicrobial Resistance GeneHealth SciencesAntibiotics +11

Comparative Genomics of Isolates of a Pseudomonas aeruginosa Epidemic Strain Associated with Chronic Lung Infections of Cystic Fibrosis Patients

Julie Jeukens, Brian Boyle, Irena Kukavica‐Ibrulj, +7

PLoS ONE

The transcriptomics of sympatric dwarf and normal lake whitefish (Coregonus clupeaformis spp., Salmonidae) divergence as revealed by next-generation sequencing

Julie Jeukens, Sébastien Renaut, Jérôme St‐Cyr, +2

Molecular Ecology

Gene Expression DivergenceGeneticsNormal Lake WhitefishAdaptive DivergenceTranscriptomics Technology +16

Genomic characterisation of an international Pseudomonas aeruginosa reference panel indicates that the two major groups draw upon distinct mobile gene pools

Luca Freschi, Claire Bertelli, Julie Jeukens, +12

FEMS Microbiology Letters

Genomic CharacterisationAntimicrobial Resistance GeneMajor GroupsAntibioticsHealth Sciences +12

The Phenomics and Expression Quantitative Trait Locus Mapping of Brain Transcriptomes Regulating Adaptive Divergence in Lake Whitefish Species Pairs (Coregonus sp.)

Andrew R. Whiteley, Nicolas Derôme, Sean M. Rogers, +7

Genetics

Salmonella enterica Prophage Sequence Profiles Reflect Genome Diversity and Can Be Used for High Discrimination Subtyping

Walid Mottawea, Marc‐Olivier Duceppe, Andrée Ann Dupras, +21

Frontiers in Microbiology

Candidate Genes and Adaptive Radiation: Insights from Transcriptional Adaptation to the Limnetic Niche among Coregonine Fishes (Coregonus spp., Salmonidae)

Julie Jeukens, David Bittner, Rune Knudsen, +1

Molecular Biology and Evolution

Draft genomes of 12 host-adapted and environmental isolates of<i>Pseudomonas aeruginosa</i>and their positions in the core genome phylogeny

Lewis Stewart, A. A. Ford, Vartul Sangal, +8

Pathogens and Disease

GeneticsGenomicsPhylogenetic AnalysisEnvironmental IsolatesMolecular Ecology +14

A Pan-Genomic Approach to Understand the Basis of Host Adaptation in Achromobacter

Julie Jeukens, Luca Freschi, Antony T. Vincent, +4

Genome Biology and Evolution

Pan-genomic ApproachKlebsiella PneumoniaeBacteriologyResident MicrobiotaPathology +14