Sequences of flavivirus-related RNA viruses persist in DNA form integrated in the genome of Aedes spp. mosquitoes

Sandrine Crochu, Shelley Cook, Houssam Attoui, +6

Journal of General Virology

Phylogenetic analysis and temporal diversification of mosquitoes (Diptera: Culicidae) based on nuclear genes and morphology

Kyanne R. Reidenbach, Shelley Cook, Matthew A. Bertone, +3

BMC Evolutionary Biology

Isolation of a new strain of the flavivirus cell fusing agent virus in a natural mosquito population from Puerto Rico

Shelley Cook, Shannon N. Bennett, Edward C. Holmes, +3

Journal of General Virology

New Insights into Flavivirus Evolution, Taxonomy and Biogeographic History, Extended by Analysis of Canonical and Alternative Coding Sequences

Grégory Moureau, Shelley Cook, Philippe Lemey, +6

PLoS ONE

New InsightsArbovirusViral EvolutionPhylogeneticsFlavivirus Genomes +16

A multigene analysis of the phylogenetic relationships among the flaviviruses (Family: Flaviviridae) and the evolution of vector transmission

Shelley Cook, Edward C. Holmes

Archives of Virology

BiologyMultigene AnalysisViral EvolutionPhylogeneticsNatural Sciences +11

Isolation of a novel species of flavivirus and a new strain of Culex flavivirus (Flaviviridae) from a natural mosquito population in Uganda

Shelley Cook, Grégory Moureau, Ralph E. Harbach, +6

Journal of General Virology

MalariaArbovirusVector-borne PathogenVector Borne DiseaseIndividual Mosquitoes +15

Novel Virus Discovery and Genome Reconstruction from Field RNA Samples Reveals Highly Divergent Viruses in Dipteran Hosts

Shelley Cook, Betty Chung, David Bass, +11

PLoS ONE

GeneticsGenomicsDipteran HostsArbovirusViral Evolution +18

Powerful Sequence Similarity Search Methods and In-Depth Manual Analyses Can Identify Remote Homologs in Many Apparently “Orphan” Viral Proteins

Durga Kuchibhatla, Westley Sherman, Betty Chung, +4

Journal of Virology

Viral Polymerase StructureGeneticsMolecular BiologyGenomicsSequence Alignment +18

Punique virus, a novel phlebovirus, related to sandfly fever Naples virus, isolated from sandflies collected in Tunisia

Elyes Zhioua, Grégory Moureau, Ifhem Chelbi, +8

Journal of General Virology

Novel flaviviruses from mosquitoes: Mosquito-specific evolutionary lineages within the phylogenetic group of mosquito-borne flaviviruses

Eili Huhtamo, Shelley Cook, Grégory Moureau, +10

Virology

MalariaNovel VirusMosquito-borne FlavivirusesArbovirusPhylogenetic Analysis +17