Whole-genome sequencing to identify transmission of Mycobacterium abscessus between patients with cystic fibrosis: a retrospective cohort study

Josephine M. Bryant, Dorothy Grogono, Daniel Greaves, +10

The Lancet

Whole-genome SequencingMedical MicrobiologyEngineeringMycobacterium AbscessusMedicine +6

Prospective use of whole genome sequencing (WGS) detected a multi-country outbreak of<i>Salmonella</i>Enteritidis

Thomas Inns, Philip Ashton, Jonathan Lighthill, +10

Epidemiology and Infection

A multi-country Salmonella Enteritidis phage type 14b outbreak associated with eggs from a German producer: ‘near real-time’ application of whole genome sequencing and food chain investigations, United Kingdom, May to September 2014

Thomas Inns, Christopher Lane, Tansy Peters, +12

Eurosurveillance

Pathogen DetectionMolecular EpidemiologyFood Processing FacilitiesUnited KingdomBacterial Pathogens +19

Phylogenetic structure of European Salmonella Enteritidis outbreak correlates with national and international egg distribution network

Tim Dallman, Thomas Inns, Thibaut Jombart, +15

Microbial Genomics

An outbreak of Shiga toxin-producing <i>Escherichia coli</i> O157:H7 associated with contaminated salad leaves: epidemiological, genomic and food trace back investigations

Amy Mikhail, Claire Jenkins, Tim Dallman, +7

Epidemiology and Infection

Food Processing FacilitiesUnited KingdomBacterial PathogensOvine ExposuresMicrobial Hazard +19

National outbreak of Shiga toxin-producing Escherichia coli O157:H7 linked to mixed salad leaves, United Kingdom, 2016

Maya Gobin, Jeremy Hawker, Paul Cleary, +14

Eurosurveillance

Campylobacter outbreak associated with raw drinking milk, North West England, 2016

John Kenyon, Thomas Inns, Heather Aird, +4

Epidemiology and Infection

Outbreak of mumps in a school setting, United Kingdom, 2013

Erlend T. Aasheim, Thomas Inns, Amy Trindall, +4

Human Vaccines & Immunotherapeutics

Disease OutbreakUnited KingdomVaccine HesitancyPreventive MedicineVaccine Surveillance +16

First use of whole-genome sequencing to investigate a cluster of Yersinia enterocolitica, Liverpool, United Kingdom, 2017

Thomas Inns, Stephen Flanagan, David R. Greig, +4

Journal of Medical Microbiology

Service evaluation of selected risk factors for extended-spectrum beta-lactamase Escherichia coli urinary tract infections: a case–control study

Thomas Inns, S. Millership, L. Teare, +2

Journal of Hospital Infection

Antimicrobial SusceptibilityAntibioticsAntimicrobial StewardshipCase–control StudyHealthcare-associated Infection +10