Amr M. Alexandari

Base-resolution models of transcription-factor binding reveal soft motif syntax

Žiga Avsec, Melanie Weilert, Avanti Shrikumar et al. · Nature Genetics · 2021 · 689 citations · Full text

Life Sciences, Molecular Biology, Molecular Genetics +13

Opportunities and obstacles for deep learning in biology and medicine

Travers Ching, Daniel Himmelstein, Brett K. Beaulieu‐Jones et al. · bioRxiv (Cold Spring Harbor Laboratory) · 2017 · 309 citations · Full text

Computing, Biomedical Sciences, Computational Biology +8

Short tandem repeats bind transcription factors to tune eukaryotic gene expression

Connor A. Horton, Amr M. Alexandari, Michael G.B. Hayes et al. · Science · 2023 · 194 citations

Life Sciences, Genetics, Molecular Biology +15

Base-resolution models of transcription factor binding reveal soft motif syntax

Žiga Avsec, Melanie Weilert, Avanti Shrikumar et al. · bioRxiv (Cold Spring Harbor Laboratory) · 2019 · 39 citations · Full text

Life Sciences, Bioinformatics, Molecular Biology +17

Maximum Likelihood with Bias-Corrected Calibration is Hard-To-Beat at Label Shift Adaptation

Amr M. Alexandari, Anshul Kundaje, Avanti Shrikumar · arXiv (Cornell University) · 2019 · 32 citations · Full text

Computing, Computer Science, Machine Learning +16