Andrea Di Gioacchino

Generative and interpretable machine learning for aptamer design and analysis of in vitro sequence selection

Andrea Di Gioacchino, Jonah Procyk, Marco Molari et al. · PLoS Computational Biology · 2022 · 36 citations · Full text

Engineering, Bioengineering, Bioinformatics +13

Cancer cells restrict immunogenicity of retrotransposon expression via distinct mechanisms

Siyu Sun, Eunae You, Jungeui Hong et al. · Immunity · 2024 · 26 citations · Full text

Medicine, Cancer Biology, Oncology +16

A transfer-learning approach to predict antigen immunogenicity and T-cell receptor specificity

Barbara Bravi, Andrea Di Gioacchino, Jorge Fernández-de-Cossio-Díaz et al. · eLife · 2023 · 23 citations · Full text

Life Sciences, Bioinformatics, Immunology +17

Retroelement decay by the exonuclease XRN1 is a viral mimicry dependency in cancer

Amir Hosseini, Håvard T. Lindholm, Raymond Chen et al. · Cell Reports · 2024 · 22 citations · Full text

Life Sciences, Molecular Biology, Oncology +17

The Heterogeneous Landscape and Early Evolution of Pathogen-Associated CpG Dinucleotides in SARS-CoV-2

Andrea Di Gioacchino, Petr Šulc, Anastassia V. Komarova et al. · Molecular Biology and Evolution · 2021 · 21 citations · Full text

Life Sciences, Evolutionary Biology, Molecular Biology +17