Xingjie Shi

Probabilistic embedding, clustering, and alignment for integrating spatial transcriptomics data with PRECAST

Wei Liu, Xu Liao, Ziye Luo et al. · Nature Communications · 2023 · 113 citations · Full text

Joint dimension reduction and clustering analysis of single-cell RNA-seq and spatial transcriptomics data

Wei Liu, Xu Liao, Yi Yang et al. · Nucleic Acids Research · 2022 · 97 citations · Full text

Engineering, Machine Learning, Single-cell Rna-seq +30

SC-MEB: spatial clustering with hidden Markov random field using empirical Bayes

Yi Yang, Xingjie Shi, Wei Liu et al. · Briefings in Bioinformatics · 2021 · 79 citations · Full text

Engineering, Spatial Omics, Gene Expression Profiling +24

MR-LDP: a two-sample Mendelian randomization for GWAS summary statistics accounting for linkage disequilibrium and horizontal pleiotropy

Qing Cheng, Yi Yang, Xingjie Shi et al. · NAR Genomics and Bioinformatics · 2020 · 62 citations · Full text

Integrated analysis of multidimensional omics data on cutaneous melanoma prognosis

Yu Jiang, Xingjie Shi, Qing Zhao et al. · Genomics · 2016 · 54 citations · Full text

Dermoscopic Image, Medicine, Multi-omics Study +10