Paolo Marcatili

BepiPred-2.0: improving sequence-based B-cell epitope prediction using conformational epitopes

Martin Closter Jespersen, Bjoern Peters, Morten Nielsen et al. · Nucleic Acids Research · 2017 · 1.7K citations · Full text

Engineering, Adaptive Immune System, Immunology +17

NetMHCpan-4.0: Improved Peptide–MHC Class I Interaction Predictions Integrating Eluted Ligand and Peptide Binding Affinity Data

Vanessa Jurtz, Sinu Paul, Massimo Andreatta et al. · The Journal of Immunology · 2017 · 1.5K citations · Full text

Mhc Class, Immunology, Molecular Biology +16

DeepTMHMM predicts alpha and beta transmembrane proteins using deep neural networks

Jeppe Hallgren, Konstantinos D. Tsirigos, Mads Damgaard Pedersen et al. · 2022 · 1.4K citations · Full text

Beta Barrels, Deep Neural Networks, Protein Secretion +15

Improved methods for predicting peptide binding affinity to <scp>MHC</scp> class <scp>II</scp> molecules

Kamilla Kjærgaard Jensen, Massimo Andreatta, Paolo Marcatili et al. · Immunology · 2018 · 784 citations · Full text

NetSurfP‐2.0: Improved prediction of protein structural features by integrated deep learning

Michael Schantz Klausen, Martin Closter Jespersen, Henrik Nielsen et al. · Proteins Structure Function and Bioinformatics · 2019 · 591 citations · Full text