Visualizing DNA folding and RNA in embryos at single-cell resolution

Leslie J. Mateo, Sedona E. Murphy, Antonina Hafner, +3

Nature

ChromatinCell LineageDevelopmental BiologyCell DivisionSingle Cell Sequencing +11

How subtle changes in 3D structure can create large changes in transcription

Jordan Yupeng Xiao, Antonina Hafner, Alistair N. Boettiger

eLife

Animal GenomesTad BoundariesLarge ChangesNatural SciencesGenetics +12

Loop stacking organizes genome folding from TADs to chromosomes

Antonina Hafner, Minhee Park, Scott E. Berger, +3

Molecular Cell

BiologyChromatinGeneticsGenome StructureChromosome Biology +4

p53 pulses lead to distinct patterns of gene expression albeit similar DNA-binding dynamics

Antonina Hafner, Jacob Stewart-Ornstein, Jeremy E. Purvis, +3

Nature Structural & Molecular Biology

ChromatinLineage PlasticitySystems BiologyDistinct PatternsMolecular Pathway +9

A Comprehensive Drosophila melanogaster Transcription Factor Interactome

Leila Shokri, Sachi Inukai, Antonina Hafner, +11

Cell Reports

mSWI/SNF promotes Polycomb repression both directly and through genome-wide redistribution

Christopher M. Weber, Antonina Hafner, Jacob G. Kirkland, +4

Nature Structural & Molecular Biology

ChromatinTranscriptional RegulationGeneticsGenomic MechanismGene Regulation +7

Quantifying the Central Dogma in the p53 Pathway in Live Single Cells

Antonina Hafner, José Reyes, Jacob Stewart-Ornstein, +3

Cell Systems

Tumor BiologyCell DivisionTumor HeterogeneityMedicineCentral Dogma +9

Identification of universal and cell-type specific p53 DNA binding

Antonina Hafner, Lyubov Kublo, Michael Tsabar, +2

BMC Molecular and Cell Biology

A leukemia-protective germline variant mediates chromatin module formation via transcription factor nucleation

Gerard Llimos, Vincent Gardeux, Ute Koch, +18

Nature Communications

Loop stacking organizes genome folding from TADs to chromosomes

Antonina Hafner, Minhee Park, Scott E. Berger, +2

GeneticsLoop StackingGenomicsEpigeneticsChromatin Architecture +18