Consistent Viral Evolutionary Changes Associated with the Progression of Human Immunodeficiency Virus Type 1 Infection

Raj Shankarappa, Joseph B. Margolick, Stephen J. Gange, +9

Journal of Virology

Viral EvolutionViral PersistenceNeurovirologyGeneticsPathogenesis +12

Improved Coreceptor Usage Prediction and GenotypicMonitoring of R5-to-X4 Transition by Motif Analysis of HumanImmunodeficiency Virus Type 1 <i>env</i> V3 LoopSequences

Mark A. Jensen, Fu-Sheng Li, Angélique B. van ’t Wout, +7

Journal of Virology

Cellular Immune Responses and Viral Diversity in Individuals Treated during Acute and Early HIV-1 Infection

Marcus Altfeld, Eric Rosenberg, Raj Shankarappa, +15

The Journal of Experimental Medicine

Early Hiv-1 InfectionAcute Hiv InfectionImmunologyCd4 T Cell ResponsesImmune System +16

Tat Protein of Human Immunodeficiency Virus Type 1 Subtype C Strains Is a Defective Chemokine

Udaykumar Ranga, Raj Shankarappa, Nagadenahalli B. Siddappa, +8

Journal of Virology

Enhanced Detection of Human Immunodeficiency Virus Type 1-Specific T-Cell Responses to Highly Variable Regions by Using Peptides Based on Autologous Virus Sequences

Marcus Altfeld, Marylyn M. Addo, Raj Shankarappa, +13

Journal of Virology

Adaptive Immune SystemImmunologyAntigen ProcessingCd4 T Cell ResponsesImmunotherapy +17

Human Immunodeficiency Virus Type 1 Env Sequences from Calcutta in Eastern India: Identification of Features That Distinguish Subtype C Sequences in India from Other Subtype C Sequences

Raj Shankarappa, Ramdas Chatterjee, Gerald H. Learn, +8

Journal of Virology

Evolution of Human Immunodeficiency Virus Type 1 Envelope Sequences in Infected Individuals with Differing Disease Progression Profiles

Raj Shankarappa, Phalguni Gupta, Gerald H. Learn, +6

Virology

Primary ImmunodeficiencyViral EvolutionHuman RetrovirusPathogenesisImmunology +9

Identification of Subtype C Human Immunodeficiency Virus Type 1 by Subtype-Specific PCR and Its Use in the Characterization of Viruses Circulating in the Southern Parts of India

Nagadenahalli B. Siddappa, Prashanta Kumar Dash, Anita Mahadevan, +14

Journal of Clinical Microbiology

Influence of Random Genetic Drift on Human Immunodeficiency Virus Type 1<i>env</i>Evolution During Chronic Infection

Daniel Shriner, Raj Shankarappa, Mark A. Jensen, +4

Genetics

Random Genetic DriftImmunodeficienciesGeneticsImmunologyGenetic Epidemiology +19

Early Induction and Maintenance of Env-Specific T-Helper Cells following Human Immunodeficiency Virus Type 1 Infection

Uma Malhotra, Sarah Holte, Tuofu Zhu, +7

Journal of Virology

Th ResponsesAdaptive Immune SystemImmunologyEnv-specific T-helper CellsCd4 T Cell Responses +15