Distinct XPPX sequence motifs induce ribosome stalling, which is rescued by the translation elongation factor EF-P

Lauri Peil, Agata L. Starosta, Jürgen Lassak, +7

Proceedings of the National Academy of Sciences

Protein AssemblyMolecular BiologyMolecular GeneticsProtein SynthesisStalled Ribosomes +14

Comparison and applications of label-free absolute proteome quantification methods on Escherichia coli

Liisa Arike, Kaspar Valgepea, Lauri Peil, +3

Journal of Proteomics

Proteomic TechnologyMedicineNatural SciencesMicrobial ProteomicsEscherichia Coli +4

Structural Basis for Polyproline-Mediated Ribosome Stalling and Rescue by the Translation Elongation Factor EF-P

Paul Huter, Stefan Arenz, Lars V. Bock, +15

Molecular Cell

Protein FunctionProtein BiosynthesisMolecular BiologyStructural BasisBiomolecular Engineering +4

Translational stalling at polyproline stretches is modulated by the sequence context upstream of the stall site

Agata L. Starosta, Jürgen Lassak, Lauri Peil, +6

Nucleic Acids Research

Protein ChemistrySequence Context UpstreamPpp-containing ProteinsProtein AssemblyBiochemistry +12

Lys34 of translation elongation factor EF-P is hydroxylated by YfcM

Lauri Peil, Agata L. Starosta, Kai Virumäe, +4

Nature Chemical Biology

BiochemistryProtein FoldingNatural SciencesMolecular BiologyProtein Biosynthesis

Rio1 mediates ATP-dependent final maturation of 40S ribosomal subunits

Tomasz W. Turowski, Simon Lebaron, Elodie Zhang, +6

Nucleic Acids Research

BiologyVivo Binding SitesNatural SciencesRibosomal SubunitsUv Cross-linking +13

Spectral Counting Label-Free Proteomics

Liisa Arike, Lauri Peil

Methods in molecular biology

BioinformaticsProteomic TechnologyEngineeringMedicineComputational Biology +5

Erythromycin- and Chloramphenicol-Induced Ribosomal Assembly Defects Are Secondary Effects of Protein Synthesis Inhibition

Triinu Siibak, Lauri Peil, Liqun Xiong, +3

Antimicrobial Agents and Chemotherapy

Small SubunitsBiosynthesisBiochemistryProtein AssemblyProtein Folding +12

Chemical Evolution of a Bacterial Proteome

Michael Georg Hoesl, Stefan Oehm, Patrick Durkin, +8

Angewandte Chemie International Edition

Ribosome reactivation by replacement of damaged proteins

Arto Pulk, Aivar Liiv, Lauri Peil, +3

Molecular Microbiology

Mda ParticlesProtein FunctionRibosome ReactivationBiochemistryProtein Folding +11