James Lyons

Improving prediction of secondary structure, local backbone angles and solvent accessible surface area of proteins by iterative deep learning

Rhys Heffernan, Kuldip K. Paliwal, James Lyons et al. · Scientific Reports · 2015 · 364 citations · Full text

Gram-positive and Gram-negative protein subcellular localization by incorporating evolutionary-based descriptors into Chou׳s general PseAAC

Abdollah Dehzangi, Rhys Heffernan, Alok Sharma et al. · Journal of Theoretical Biology · 2014 · 243 citations · Full text

Protein Function, Protein Expression, Biochemistry +8

SPIDER2: A Package to Predict Secondary Structure, Accessible Surface Area, and Main-Chain Torsional Angles by Deep Neural Networks

Yuedong Yang, Rhys Heffernan, Kuldip K. Paliwal et al. · Methods in molecular biology · 2016 · 177 citations

Geometric Modeling, Geometric Learning, Deep Neural Networks +14

Predicting backbone Cα angles and dihedrals from protein sequences by stacked sparse auto‐encoder deep neural network

James Lyons, Abdollah Dehzangi, Rhys Heffernan et al. · Journal of Computational Chemistry · 2014 · 152 citations · Full text

A feature extraction technique using bi-gram probabilities of position specific scoring matrix for protein fold recognition

Alok Sharma, James Lyons, Abdollah Dehzangi et al. · Journal of Theoretical Biology · 2012 · 152 citations

Structural Bioinformatics, Protein Folding, Bi-gram Probabilities +15