The Salmonella In Silico Typing Resource (SISTR): An Open Web-Accessible Tool for Rapidly Typing and Subtyping Draft Salmonella Genome Assemblies

Catherine E. Yoshida, Peter Kruczkiewicz, Chad Laing, +4

PLoS ONE

Molecular EpidemiologyOpen Web-accessible ToolGeneticsSilico Typing ResourceGenomics +17

Divergent SARS-CoV-2 variant emerges in white-tailed deer with deer-to-human transmission

Bradley Pickering, Oliver Lung, Finlay Maguire, +37

Nature Microbiology

Viral EvolutionBroad-host-range VirusesEvolutionary BiologyImmunologySustained Evolution +10

Characterization of neurotropic HPAI H5N1 viruses with novel genome constellations and mammalian adaptive mutations in free-living mesocarnivores in Canada

Tamiru N. Alkie, Sherri Cox, Carissa Embury‐Hyatt, +33

Emerging Microbes & Infections

Novel Genome ConstellationsGeneticsImmunologyRna Polymerase ComplexPathology +22

The Validation and Implications of Using Whole Genome Sequencing as a Replacement for Traditional Serotyping for a National Salmonella Reference Laboratory

C. Yachison, Catherine Yoshida, James A. Robertson, +8

Frontiers in Microbiology

Evaluation of MALDI-TOF mass spectroscopy methods for determination of Escherichia coli pathotypes

Clifford G. Clark, Peter Kruczkiewicz, Cai Guan, +9

Journal of Microbiological Methods

BiochemistryPathogen DetectionMass SpectrometryPathogen CharacterizationEnvironmental Microbiology +5

Development of a comparative genomic fingerprinting assay for rapid and high resolution genotyping of Arcobacter butzleri

Andrew L. Webb, Peter Kruczkiewicz, L. Brent Selinger, +2

BMC Microbiology

Development and Validation of a Comparative Genomic Fingerprinting Method for High-Resolution Genotyping of Campylobacter jejuni

Eduardo N. Taboada, Susan L. Ross, Steven K. Mutschall, +11

Journal of Clinical Microbiology

Pathogen DetectionMolecular EpidemiologyGeneticsHigh-resolution GenotypingGenomics +16

Highly divergent white-tailed deer SARS-CoV-2 with potential deer-to-human transmission

Bradley Pickering, Oliver Lung, Finlay Maguire, +36

BiologyViral EvolutionDivergent LineageEmerging Infectious DiseasesNatural Sciences +11

Comprehensive assessment of the quality of Salmonella whole genome sequence data available in public sequence databases using the Salmonella in silico Typing Resource (SISTR)

James A. Robertson, Catherine Yoshida, Peter Kruczkiewicz, +4

Microbial Genomics

Pathogen DetectionMolecular EpidemiologySilico Typing ResourcePublic Sequence DatabasesGenomics +16

The Integrated Rapid Infectious Disease Analysis (IRIDA) Platform

Thomas Matthews, Franklin Bristow, Emma Griffiths, +19

Pathogen DetectionDisease DetectionGenomicsBacterial PathogensHigh Throughput Sequencing +18