Sustainable computational science: the ReScience initiative

Konrad Hinsen, Frédéric Alexandre, Thomas Arildsen, +41

PeerJ Computer Science

Developing Itô stochastic differential equation models for neuronal signal transduction pathways

Tiina Manninen, Marja‐Leena Linne, Keijo Ruohonen

Computational Biology and Chemistry

EngineeringNeurodynamicsComputational NeuroscienceStochastic CalculusNeuronal Network +6

Cerebellar Purkinje cells control eye movements with a rapid rate code that is invariant to spike irregularity

Hannah L. Payne, Ranran L French, Christine C. Guo, +3

eLife

Postsynaptic Signal Transduction Models for Long-Term Potentiation and Depression

Tiina Manninen, Katri Hituri, Jeanette Hellgren Kotaleski, +2

Frontiers in Computational Neuroscience

Synaptic TransmissionNeurotransmitterNeurotransmissionStructural PlasticitySynaptic Signaling +18

Effects of Transmitters and Amyloid-Beta Peptide on Calcium Signals in Rat Cortical Astrocytes: Fura-2AM Measurements and Stochastic Model Simulations

Eeva Toivari, Tiina Manninen, Amit K. Nahata, +2

PLoS ONE

Simulation tools for biochemical networks: evaluation of performance and usability

Antti Pettinen, Tommi Aho, Olli‐Pekka Smolander, +5

Bioinformatics

Reproducibility and Comparability of Computational Models for Astrocyte Calcium Excitability

Tiina Manninen, Riikka Havela, Marja‐Leena Linne

Frontiers in Neuroinformatics

Challenges in Reproducibility, Replicability, and Comparability of Computational Models and Tools for Neuronal and Glial Networks, Cells, and Subcellular Structures

Tiina Manninen, Jugoslava Aćimović, Riikka Havela, +2

Frontiers in Neuroinformatics

Glial NetworksEngineeringSimulationReproducibility IssuesSocial Sciences +17

Astrocyte-mediated spike-timing-dependent long-term depression modulates synaptic properties in the developing cortex

Tiina Manninen, Aušra Saudargienė, Marja‐Leena Linne

PLoS Computational Biology

Analysis of Network Models with Neuron-Astrocyte Interactions

Tiina Manninen, Jugoslava Aćimović, Marja‐Leena Linne

Neuroinformatics