DAPAR & ProStaR: software to perform statistical analyses in quantitative discovery proteomics

Samuel Wieczorek, Florence Combes, Cosmin Lazar, +8

Bioinformatics

Calibration plot for proteomics: A graphical tool to visually check the assumptions underlying FDR control in quantitative experiments

Quentin Giai Gianetto, Florence Combes, Claire Ramus, +3

PROTEOMICS

Calibration PlotMolecular BiologyFdr ControlProteomic TechnologyGraphical Method +15

Unbalanced expression of CK2 kinase subunits is sufficient to drive epithelial-to-mesenchymal transition by Snail1 induction

Alexandre Deshière, Eve Duchemin-Pelletier, Elodie Spreux, +9

Oncogene

Ck2 KinaseDevelopmental BiologySignal TransductionSignaling PathwayCell Regulation +11

Identification of a novel <scp>BET</scp> bromodomain inhibitor‐sensitive, gene regulatory circuit that controls Rituximab response and tumour growth in aggressive lymphoid cancers

Anouk Emadali, Sophie Rousseaux, Juliana Bruder‐Costa, +18

EMBO Molecular Medicine

Goulphar: rapid access and expertise for standard two-color microarray normalization methods

Sophie Lemoine, Florence Combes, Nicolas Servant, +1

BMC Bioinformatics

An evaluation of custom microarray applications: the oligonucleotide design challenge

Sophie Lemoine, Florence Combes, Stéphane Le Crom

Nucleic Acids Research

EngineeringOligonucleotide DesignMolecular BiologyTranscriptomics TechnologyGenomics +19

Adipose Gene Expression Prior to Weight Loss Can Differentiate and Weakly Predict Dietary Responders

David M. Mutch, Ramzi Temanni, Corneliu Hénégar, +11

PLoS ONE

Uranium perturbs signaling and iron uptake response in Arabidopsis thaliana roots

Fany Doustaly, Florence Combes, Julie Fiévet, +11

Metallomics

Proteomic characterization of human exhaled breath condensate

Maud Lacombe, Caroline Marie, Florence Combes, +6

Journal of Breath Research

PathologyHealthy DonorsProteomic TechnologyBioanalysisBiomarker Discovery +14

Bioinformatics Tools and Workflow to Select Blood Biomarkers for Early Cancer Diagnosis: An Application to Pancreatic Cancer

Yves Vandenbrouck, David Christiany, Florence Combes, +2

PROTEOMICS

EngineeringPathologyTumor BiologyCandidate BiomarkersProteomic Technology +21