Characterization of Metabolic Patterns in Mouse Oocytes during Meiotic Maturation

Ling Li, Shuai Zhu, Wenjie Shu, +17

Molecular Cell

BiologyOocyteDevelopmental BiologyFertilityCell Division +9

Comprehensive Identification and Annotation of Cell Type-Specific and Ubiquitous CTCF-Binding Sites in the Human Genome

Hebing Chen, Yao Tian, Wenjie Shu, +2

PLoS ONE

Chromatin InsulatorsGeneticsEpigeneticsUbiquitous Ctcf-binding SitesHuman Genome +20

Embryonic defects induced by maternal obesity in mice derive from Stella insufficiency in oocytes

Longsen Han, Chao Ren, Ling Li, +8

Nature Genetics

ObesityOocyteEmbryonic DefectsKnockout MouseDevelopmental Biology +13

BiRen: predicting enhancers with a deep-learning-based model using the DNA sequence alone

Bite Yang, Feng Liu, Chao Ren, +4

Bioinformatics

METTL3-mediated m⁶A is required for murine oocyte maturation and maternal-to-zygotic transition

Xuesong Sui, Yue Hu, Chao Ren, +6

Cell Cycle

Oocyte competence is maintained by m6A methyltransferase KIAA1429-mediated RNA metabolism during mouse follicular development

Yue Hu, Zhangyi Ouyang, Xuesong Sui, +12

Cell Death and Differentiation

OocyteChromatinOocyte CompetenceDevelopmental BiologyOogenesis +7

PEDLA: predicting enhancers with a deep learning-based algorithmic framework

Feng Liu, Hao Li, Chao Ren, +2

Scientific Reports

<i>De novo</i> identification of replication-timing domains in the human genome by deep learning

Feng Liu, Chao Ren, Hao Li, +3

Bioinformatics

An integrative analysis of TFBS-clustered regions reveals new transcriptional regulation models on the accessible chromatin landscape

Hebing Chen, Hao Li, Feng Liu, +4

Scientific Reports

Zero-shot prediction of mutation effects with multimodal deep representation learning guides protein engineering

Peng Cheng, Cong Mao, Jin Tang, +17

Cell Research