starBase v2.0: decoding miRNA-ceRNA, miRNA-ncRNA and protein–RNA interaction networks from large-scale CLIP-Seq data

Jun-Hao Li, Shun Liu, Hui Zhou, +2

Nucleic Acids Research

starBase: a database for exploring microRNA–mRNA interaction maps from Argonaute CLIP-Seq and Degradome-Seq data

Jianhua Yang, Junhao Li, Peng Shao, +2

Nucleic Acids Research

EngineeringGeneticsRna SplicingTranscriptomics TechnologyGenomics +24

ChIPBase v2.0: decoding transcriptional regulatory networks of non-coding RNAs and protein-coding genes from ChIP-seq data

Keren Zhou, Shun Liu, Wenju Sun, +4

Nucleic Acids Research

Transcriptional RegulationsGeneticsMolecular BiologyTranscriptomics TechnologyGene Regulatory Network +27

ChIPBase: a database for decoding the transcriptional regulation of long non-coding RNA and microRNA genes from ChIP-Seq data

Jianhua Yang, Junhao Li, Shan Jiang, +2

Nucleic Acids Research

GeneticsMicrorna GenesGene Expression ProfilingEpigeneticsTranscriptional Regulation +14

Deep Sequencing of Human Nuclear and Cytoplasmic Small RNAs Reveals an Unexpectedly Complex Subcellular Distribution of miRNAs and tRNA 3′ Trailers

Jian‐You Liao, Liming Ma, Yanhua Guo, +4

PLoS ONE

Liver-Enriched Transcription Factors Regulate MicroRNA-122 That Targets CUTL1 During Liver Development

Hui Xu, Jie-Hua He, Zhen‐Dong Xiao, +4

Hepatology

Comprehensive Genomic Characterization of RNA-Binding Proteins across Human Cancers

Zelin Wang, Bin Li, Yuxia Luo, +6

Cell Reports

Expression analysis of phytohormone‐regulated microRNAs in rice, implying their regulation roles in plant hormone signaling

Qing Liu, Yu‐Chan Zhang, Congying Wang, +5

FEBS Letters

deepBase v2.0: identification, expression, evolution and function of small RNAs, LncRNAs and circular RNAs from deep-sequencing data

Ling‐Ling Zheng, Junhao Li, Jie Wu, +6

Nucleic Acids Research

EngineeringGeneticsNcrna FunctionsGenomicsDeep-sequencing Data +16

MicroRNA-21 promotes cell proliferation and down-regulates the expression of programmed cell death 4 (PDCD4) in HeLa cervical carcinoma cells

Qing Yao, Hui Xu, Qianqian Zhang, +2

Biochemical and Biophysical Research Communications

Tumor BiologyCervical CancerMedicineImmunologyCell Death +7