Jakob Nybo Nissen

Improved metagenome binning and assembly using deep variational autoencoders

Jakob Nybo Nissen, Joachim Johansen, Rosa Lundbye Allesøe et al. · Nature Biotechnology · 2021 · 691 citations

Life Sciences, Bioinformatics, Molecular Biology +13

Critical Assessment of Metagenome Interpretation: the second round of challenges

Fernando Meyer, Adrian Fritz, Zhi-Luo Deng et al. · Nature Methods · 2022 · 396 citations · Full text

Life Sciences, Bioinformatics, Microbiology +16

CoverM: read alignment statistics for metagenomics

Samuel T. N. Aroney, R.B. Newell, Jakob Nybo Nissen et al. · Bioinformatics · 2025 · 383 citations · Full text

Life Sciences, Bioinformatics, Microbiology +17

Genome binning of viral entities from bulk metagenomics data

Joachim Johansen, Damian R. Plichta, Jakob Nybo Nissen et al. · Nature Communications · 2022 · 120 citations · Full text

Life Sciences, Bioinformatics, Microbiology +17

Discovery of drug–omics associations in type 2 diabetes with generative deep-learning models

Rosa Lundbye Allesøe, Agnete Troen Lundgaard, Ricardo Hernández Medina et al. · Nature Biotechnology · 2023 · 105 citations · Full text

Life Sciences, Bioinformatics, Pharmacology +15