Jakob Nybo Nissen

Improved metagenome binning and assembly using deep variational autoencoders

Jakob Nybo Nissen, Joachim Johansen, Rosa Lundbye Allesøe et al. · Nature Biotechnology · 2021 · 642 citations

Metagenome Binning, Genomics, Sequence Assembly +1

Critical Assessment of Metagenome Interpretation: the second round of challenges

Fernando Meyer, Adrian Fritz, Zhi-Luo Deng et al. · Nature Methods · 2022 · 366 citations · Full text

CoverM: read alignment statistics for metagenomics

Samuel T. N. Aroney, R.B. Newell, Jakob Nybo Nissen et al. · Bioinformatics · 2025 · 239 citations · Full text

Genome binning of viral entities from bulk metagenomics data

Joachim Johansen, Damian R. Plichta, Jakob Nybo Nissen et al. · Nature Communications · 2022 · 107 citations · Full text

Discovery of drug–omics associations in type 2 diabetes with generative deep-learning models

Rosa Lundbye Allesøe, Agnete Troen Lundgaard, Ricardo Hernández Medina et al. · Nature Biotechnology · 2023 · 95 citations · Full text