Deep learning-based classification of mesothelioma improves prediction of patient outcome

Pierre Courtiol, Charles Maussion, Matahi Moarii, +14

Nature Medicine

Convolutional Neural NetworkEngineeringMachine LearningDeep LearningPathology +4

A deep learning model to predict RNA-Seq expression of tumours from whole slide images

Benoît Schmauch, Alberto Romagnoni, Elodie Pronier, +11

Nature Communications

A Path Following Algorithm for the Graph Matching Problem

Mikhail Zaslavskiy, Francis Bach, Jean‐Philippe Vert

IEEE Transactions on Pattern Analysis and Machine Intelligence

Mathematical ProgrammingEngineeringGraph Matching ProblemNetwork AnalysisGraph Matching +16

Community assessment to advance computational prediction of cancer drug combinations in a pharmacogenomic screen

Michael P. Menden, Dennis Wang, Mike J. Mason, +345

Nature Communications

Predicting Survival After Hepatocellular Carcinoma Resection Using Deep Learning on Histological Slides

Charlie Saillard, Benoît Schmauch, Oumeima Laifa, +16

Hepatology

Federated learning for predicting histological response to neoadjuvant chemotherapy in triple-negative breast cancer

Jean Ogier du Terrail, Armand Léopold, Clément Joly, +28

Nature Medicine

Breast OncologyNeoadjuvant ChemotherapyMedicineFederated LearningResponse Prediction +6

Global alignment of protein–protein interaction networks by graph matching methods

Mikhail Zaslavskiy, Francis Bach, Jean‐Philippe Vert

Bioinformatics

A new protein binding pocket similarity measure based on comparison of clouds of atoms in 3D: application to ligand prediction

Brice Hoffmann, Mikhail Zaslavskiy, Jean‐Philippe Vert, +1

BMC Bioinformatics

Chromosomal context and epigenetic mechanisms control the efficacy of genome editing by rare-cutting designer endonucleases

Fayza Daboussi, Mikhail Zaslavskiy, Laurent Poirot, +28

Nucleic Acids Research

Pacpaint: a histology-based deep learning model uncovers the extensive intratumor molecular heterogeneity of pancreatic adenocarcinoma

Charlie Saillard, F. Delecourt, Benoît Schmauch, +21

Nature Communications

EngineeringPathologyPdac MicroheterogeneityPdac EvolutionTumor Biology +19