APAtrap: identification and quantification of alternative polyadenylation sites from RNA-seq data

Congting Ye, Yuqi Long, Guoli Ji, +2

Bioinformatics

Identification of putative key genes for coastal environments and cold adaptation in mangrove Kandelia obovata through transcriptome analysis

Wenyue Su, Congting Ye, Yihui Zhang, +2

The Science of The Total Environment

BiologyMangrove KandeliaMolecular EcologyMarine GenomicsNatural Sciences +11

detectMITE: A novel approach to detect miniature inverted repeat transposable elements in genomes

Congting Ye, Guoli Ji, Chun Liang

Scientific Reports

Genome-wide alternative polyadenylation dynamics in response to biotic and abiotic stresses in rice

Congting Ye, Qian Zhou, Xiaohui Wu, +2

Ecotoxicology and Environmental Safety

Plant Molecular BiologyFunctional GenomicsAbiotic StressesPlant StressAbiotic Stress +9

scAPAtrap: identification and quantification of alternative polyadenylation sites from single-cell RNA-seq data

Xiaohui Wu, Tao Liu, Congting Ye, +2

Briefings in Bioinformatics

Alternative polyadenylation is involved in auxin‐based plant growth and development

Liwei Hong, Congting Ye, Juncheng Lin, +3

The Plant Journal

BotanyGeneticsPlant Growth RegulatorPlant DevelopmentPlant Molecular Biology +15

Role of alternative polyadenylation dynamics in acute myeloid leukaemia at single-cell resolution

Congting Ye, Qian Zhou, Yiling Hong, +1

RNA Biology

Apa DynamicsSingle-cell ResolutionMixed-phenotype Acute LeukemiaDynamic Apa UsageTumor Biology +21

PlantAPAdb: A Comprehensive Database for Alternative Polyadenylation Sites in Plants

Sheng Zu Zhu, Wenbin Ye, Lishan Ye, +7

PLANT PHYSIOLOGY

Recombinatorial Biases and Convergent Recombination Determine Interindividual TCRβ Sharing in Murine Thymocytes

Hanjie Li, Congting Ye, Guoli Ji, +8

The Journal of Immunology

Tcrβ OverlapLymphocyte DevelopmentTcr RepertoiresGeneticsAdaptive Immune System +19

Root Hair Single Cell Type Specific Profiles of Gene Expression and Alternative Polyadenylation Under Cadmium Stress

Jingyi Cao, Congting Ye, Guijie Hao, +3

Frontiers in Plant Science

Plant Molecular BiologyPlant BiologyTranscriptional RegulationPlant Gene ExpressionDevelopmental Biology +13