Liudmila S. Mainzer

Sentieon DNASeq Variant Calling Workflow Demonstrates Strong Computational Performance and Accuracy

Katherine I. Kendig, Saurabh Baheti, Matthew A. Bockol et al. · Frontiers in Genetics · 2019 · 264 citations · Full text

Genetics, Genome Analysis Toolkit, Molecular Biology +21

Simulating Next-Generation Sequencing Datasets from Empirical Mutation and Sequencing Models

Zachary Stephens, Matthew E. Hudson, Liudmila S. Mainzer et al. · PLoS ONE · 2016 · 122 citations · Full text

Genetics, Empirical Mutation, Analysis Toolkit +22

Assessing computational genomics skills: Our experience in the H3ABioNet African bioinformatics network

C. Victor Jongeneel, Ovokeraye H. Oduaran, Ezekiel Adebiyi et al. · PLoS Computational Biology · 2017 · 69 citations · Full text

Engineering, Genetics, Computational Genomics Skills +16

Recommendations for performance optimizations when using GATK3.8 and GATK4

Jacob R. Heldenbrand, Saurabh Baheti, Matthew A. Bockol et al. · BMC Bioinformatics · 2019 · 65 citations · Full text

Developing reproducible bioinformatics analysis workflows for heterogeneous computing environments to support African genomics

Shakuntala Baichoo, Yassine Souilmi, Sumir Panji et al. · BMC Bioinformatics · 2018 · 55 citations · Full text