The DNA-binding network of Mycobacterium tuberculosi s

K Minch, Tige R. Rustad, Eliza J. R. Peterson, +12

Nature Communications

Antigen Availability Shapes T Cell Differentiation and Function during Tuberculosis

Albanus O. Moguche, Munyaradzi Musvosvi, Adam Penn‐Nicholson, +24

Cell Host & Microbe

Pulmonary TuberculosisAdaptive Immune SystemT-regulatory CellImmunologyTuberculosis +6

Mapping and manipulating the Mycobacterium tuberculosis transcriptome using a transcription factor overexpression-derived regulatory network

Tige R. Rustad, K Minch, Shuyi Ma, +8

Genome biology

Bacterial Factors That Predict Relapse after Tuberculosis Therapy

Roberto Colangeli, Hannah Jedrey, Soyeon Kim, +14

New England Journal of Medicine

Phase variation in <i>Mycobacterium tuberculosis glpK</i> produces transiently heritable drug tolerance

Hassan Safi, Pooja Gopal, Subramanya Lingaraju, +14

Proceedings of the National Academy of Sciences

Methodology for Using Long-Term Accelerometry Monitoring to Describe Daily Activity Patterns in COPD

Ariel Hecht, Shuyi Ma, János Pórszász, +2

COPD Journal of Chronic Obstructive Pulmonary Disease

Mapping and manipulating the Mycobacterium tuberculosis transcriptome using a transcription factor overexpression-derived regulatory network

Tige R. Rustad, K Minch, Shuyi Ma, +8

Genome Biology

Mycobacterium Tuberculosis SensesGeneticsMolecular BiologyGene Regulatory NetworkTranscriptional Regulation +15

Network analysis identifies Rv0324 and Rv0880 as regulators of bedaquiline tolerance in Mycobacterium tuberculosis

Eliza J. R. Peterson, Shuyi Ma, David R. Sherman, +1

Nature Microbiology

Medical MicrobiologyPulmonary TuberculosisHealth SciencesTuberculosis PreventionBacteriology +10

Spatial modeling of prostate cancer metabolic gene expression reveals extensive heterogeneity and selective vulnerabilities

Yuliang Wang, Shuyi Ma, Walter L. Ruzzo

Scientific Reports

Integrated Modeling of Gene Regulatory and Metabolic Networks in Mycobacterium tuberculosis

Shuyi Ma, K Minch, Tige R. Rustad, +4

PLoS Computational Biology

EngineeringMolecular BiologyMetabolic NetworksMetabolic ModelMetabolic Network +18