Pelin Icer Baykal

Unlocking capacities of genomics for the COVID-19 response and future pandemics

Sergey Knyazev, Karishma Chhugani, Varuni Sarwal et al. · Nature Methods · 2022 · 67 citations · Full text

Life Sciences, Genetics, Infectious Diseases +14

Wastewater monitoring of SARS-CoV-2 shows high correlation with COVID-19 case numbers and allowed early detection of the first confirmed B.1.1.529 infection in Switzerland: results of an observational surveillance study

Claudia Bagutti, Monica Alt Hug, Philippe Heim et al. · Swiss Medical Weekly · 2022 · 38 citations · Full text

Veterinary Medicine, Infectious Diseases, Microbiology +17

Global transmission network of SARS-CoV-2: from outbreak to pandemic

Pavel Skums, Alexander Kirpich, Pelin Icer Baykal et al. · medRxiv · 2020 · 32 citations · Full text

Veterinary Medicine, Infectious Disease Control, Infectious Diseases +17

V-pipe 3.0: a sustainable pipeline for within-sample viral genetic diversity estimation

Lara Fuhrmann, Kim Philipp Jablonski, Ivan Topolsky et al. · GigaScience · 2024 · 19 citations · Full text

Life Sciences, Bioinformatics, Microbiology +13

Tracking SARS-CoV-2 variants of concern in wastewater: an assessment of nine computational tools using simulated genomic data

Steven G. Sutcliffe, Susanne A. Kraemer, Isaac Ellmen et al. · Microbial Genomics · 2024 · 16 citations · Full text

Life Sciences, Infectious Diseases, Microbiology +17