Integration of omic networks in a developmental atlas of maize

Justin W. Walley, Ryan C. Sartor, Zhouxin Shen, +8

Science

Plant GeneticsBotanyGeneticsGene Regulatory NetworkGenomics +22

Plant elicitor peptides are conserved signals regulating direct and indirect antiherbivore defense

Alisa Huffaker, Gregory Pearce, Nathalie Veyrat, +9

Proceedings of the National Academy of Sciences

BiologyPlant ImmunityBiosynthesisSignal TransductionIndirect Antiherbivore Defense +13

Maize death acids, 9-lipoxygenase–derived cyclopente(a)nones, display activity as cytotoxic phytoalexins and transcriptional mediators

Shawn A. Christensen, Alisa Huffaker, Fatma Kaplan, +14

Proceedings of the National Academy of Sciences

Hypocotyl Transcriptome Reveals Auxin Regulation of Growth-Promoting Genes through GA-Dependent and -Independent Pathways

Elisabeth J. Chapman, Kathleen Greenham, Cristina Castillejo, +4

PLoS ONE

BiologyGrowth-promoting Genes-Independent PathwaysPlant Molecular BiologyDevelopmental Biology +11

Reconstruction of protein networks from an atlas of maize seed proteotypes

Justin W. Walley, Zhouxin Shen, Ryan C. Sartor, +4

Proceedings of the National Academy of Sciences

Plant GeneticsEngineeringGeneticsMaize Seed ProteotypesAbundant Mrnas +17

Identification of the expressome by machine learning on omics data

Ryan C. Sartor, Jaclyn M Noshay, Nathan M. Springer, +1

Proceedings of the National Academy of Sciences

Plant GeneticsGeneticsMolecular BiologyGenomicsGene Recognition +18

Expansion of the circadian transcriptome in Brassica rapa and genome-wide diversification of paralog expression patterns

Kathleen Greenham, Ryan C. Sartor, Stevan Zorich, +3

eLife

Improving Gene Regulatory Network Inference by Incorporating Rates of Transcriptional Changes

Jigar Desai, Ryan C. Sartor, Lovely Mae F. Lawas, +2

Scientific Reports

Genetic and genomic resources to study natural variation in <i>Brassica rapa</i>

Ping Lou, Scott Woody, Kathleen Greenham, +14

Plant Direct

Analysis of differential gene expression and alternative splicing is significantly influenced by choice of reference genome

Erin Slabaugh, Jigar Desai, Ryan C. Sartor, +3

RNA

GeneticsRna SplicingRelated GenomesMolecular BiologyDifferential Gene Expression +20