Full-length haplotype reconstruction to infer the structure of heterogeneous virus populations

Francesca Di Giallonardo, Armin Töpfer, Mélanie Rey, +16

Nucleic Acids Research

GeneticsViral Polymerase MechanismGenomicsFull-length Haplotype ReconstructionViral Evolution +17

Optimization and validation of sample preparation for metagenomic sequencing of viruses in clinical samples

Dagmara W. Lewandowska, Osvaldo Zagordi, Fabienne-Desirée Geissberger, +6

Microbiome

Two Years of Viral Metagenomics in a Tertiary Diagnostics Unit: Evaluation of the First 105 Cases

Verena Kufner, Andreas Plate, Stefan Schmutz, +7

Genes

First 105Viral DiagnosticsImmunologyPathologyCovid-19 +15

SARS-CoV-2 variants reveal features critical for replication in primary human cells

Marie O. Pohl, Idoia Busnadiego, Verena Kufner, +9

PLoS Biology

Viral ReplicationViral DiagnosticsPrimary Human CellsImmunologyViral Pathogenesis +14

Multifactorial seroprofiling dissects the contribution of pre-existing human coronaviruses responses to SARS-CoV-2 immunity

Irène A. Abela, Chloé Pasin, Magdalena Schwarzmüller, +28

Nature Communications

Profiling host ANP32A splicing landscapes to predict influenza A virus polymerase adaptation

Patricia Domingues, Davide Eletto, Carsten Magnus, +7

Nature Communications

Viral Metagenomics in the Clinical Realm: Lessons Learned from a Swiss-Wide Ring Trial

Thomas Junier, Michael Huber, Stefan Schmutz, +14

Genes

Absenteeism and presenteeism in healthcare workers due to respiratory illness

Stefan P. Kuster, Jürg Böni, Roger D. Kouyos, +17

Infection Control and Hospital Epidemiology

Antibodies from convalescent plasma promote SARS-CoV-2 clearance in individuals with and without endogenous antibody response

Maddalena Marconato, Irène A. Abela, Anthony Hauser, +20

Journal of Clinical Investigation

Swiss public health measures associated with reduced SARS-CoV-2 transmission using genome data

Sarah Nadeau, Timothy G. Vaughan, Christiane Beckmann, +45

Science Translational Medicine

Genome DataVirus EpidemiologyEpidemiological DynamicLocal Transmission DynamicsCovid-19 Epidemiology +19