Lotte J. U. Pronk

MIBiG 3.0: a community-driven effort to annotate experimentally validated biosynthetic gene clusters

Barbara R. Terlouw, Kai Blin, Jorge C. Navarro-Muñoz et al. · Nucleic Acids Research · 2022 · 453 citations · Full text

Life Sciences, Bioinformatics, Molecular Biology +17

Disentangling the genetic basis of rhizosphere microbiome assembly in tomato

Ben O. Oyserman, Stalin Sarango Flores, Thom Griffioen et al. · Nature Communications · 2022 · 174 citations · Full text

Life Sciences, Genetics, Microbiology +13

Whokaryote: distinguishing eukaryotic and prokaryotic contigs in metagenomes based on gene structure

Lotte J. U. Pronk, Marnix H. Medema · Microbial Genomics · 2022 · 59 citations · Full text

Life Sciences, Bioinformatics, Microbiology +16

Crop root bacterial and viral genomes reveal unexplored species and microbiome patterns

Rui Dai, Jingying Zhang, Fang Liu et al. · Cell · 2025 · 41 citations · Full text

Agriculture, Microbiology, Sustainable Agriculture +17

Whokaryote: distinguishing eukaryotic and prokaryotic contigs in metagenomes based on gene structure

Lotte J. U. Pronk, Marnix H. Medema · bioRxiv (Cold Spring Harbor Laboratory) · 2021 · 15 citations · Full text

Life Sciences, Bioinformatics, Microbiology +16