A Dynamic Range Compression and Three-Dimensional Peptide Fractionation Analysis Platform Expands Proteome Coverage and the Diagnostic Potential of Whole Saliva

Sricharan Bandhakavi, Matthew D. Stone, Getiria Onsongo, +2

Journal of Proteome Research

Diagnostic PotentialLarge Dynamic RangeProtein FoldingMedicineBioanalysis +11

Quantitative Proteomics Reveals Myosin and Actin as Promising Saliva Biomarkers for Distinguishing Pre-Malignant and Malignant Oral Lesions

Ebbing P. de Jong, Hongwei Xie, Getiria Onsongo, +11

PLoS ONE

Proteomics Analysis of Cells in Whole Saliva from Oral Cancer Patients via Value-added Three-dimensional Peptide Fractionation and Tandem Mass Spectrometry

Hongwei Xie, Getiria Onsongo, Jonathan Popko, +6

Molecular & Cellular Proteomics

Flexible and Accessible Workflows for Improved Proteogenomic Analysis Using the Galaxy Framework

Pratik Jagtap, James E. Johnson, Getiria Onsongo, +7

Journal of Proteome Research

Accessible WorkflowsEngineeringSoftware ToolsProteogenomics CombinesGenomics +18

Using Galaxy-P to leverage RNA-Seq for the discovery of novel protein variations

Gloria Sheynkman, James E. Johnson, Pratik Jagtap, +5

BMC Genomics

Next generation sequencing for clinical diagnostics: Five year experience of an academic laboratory

Paige Hartman, Kenneth B. Beckman, Kevin A.T. Silverstein, +22

Molecular Genetics and Metabolism Reports

Clinical Validation of Targeted Next-Generation Sequencing for Inherited Disorders

Sophia Yohe, Adam Hauge, Kari Bunjer, +12

Archives of Pathology & Laboratory Medicine

Quantitative Nuclear Proteomics Identifies mTOR Regulation of DNA Damage Response

Sricharan Bandhakavi, Young Mi Kim, Seung‐Hyun Ro, +5

Molecular & Cellular Proteomics

CNV-RF Is a Random Forest–Based Copy Number Variation Detection Method Using Next-Generation Sequencing

Getiria Onsongo, Linda B. Baughn, Matthew Bower, +4

Journal of Molecular Diagnostics

SequencingNext-generation SequencingGeneticsSequence AnalysisComputational Biology +5

An Accessible Proteogenomics Informatics Resource for Cancer Researchers

Matthew Chambers, Pratik Jagtap, James E. Johnson, +12

Cancer Research