Reconstructing mitochondrial genomes directly from genomic next-generation sequencing reads—a baiting and iterative mapping approach

Christoph Hahn, Lutz Bachmann, Bastien Chevreux

Nucleic Acids Research

Comparative GenomicsGeneticsGenomicsDna BarcodingIterative Mapping +19

Genome Sequence Assembly Using Trace Signals and Additional Sequence Information.

Bastien Chevreux, Thomas C. Wetter, Sándor Suhai

Using the miraEST Assembler for Reliable and Automated mRNA Transcript Assembly and SNP Detection in Sequenced ESTs

Bastien Chevreux, Thomas Pfisterer, Bernd Drescher, +4

Genome Research

GeneticsMolecular BiologyTranscriptomics TechnologyGenomicsSequence Alignment +20

The Origins of 168, W23, and Other <i>Bacillus subtilis</i> Legacy Strains

Daniel R. Zeigler, Zoltán Prágai, Sabrina Rodriguez, +6

Journal of Bacteriology

Small Genes under Sporulation Control in the <i>Bacillus subtilis</i> genome

Matthias H. Schmalisch, Elisa Maiques, Lachezar A. Nikolov, +6

Journal of Bacteriology

Transcription UnitsGeneticsBacteriologyRna SplicingOligonucleotide Microarray +16

Genetic Competence Drives Genome Diversity in Bacillus subtilis

Patrícia H. Brito, Bastien Chevreux, Cláudia R. Serra, +3

Genome Biology and Evolution

Bacillus SubtilisPhylogeneticsMolecular EcologyProkaryote GenomesComparative Genomics +12

Overexpression of a non-native deoxyxylulose-dependent vitamin B6 pathway in Bacillus subtilis for the production of pyridoxine

Fabian M. Commichau, Ariane Alzinger, Rafael Sande, +6

Metabolic Engineering

Bacillus SubtilisBiosynthesisBiochemistryBacteriologyMicrobiology +1

Engineering Bacillus subtilis for the conversion of the antimetabolite 4-hydroxy-l-threonine to pyridoxine

Fabian M. Commichau, Ariane Alzinger, Rafael Sande, +10

Metabolic Engineering

Bacillus SubtilisBiosynthesisEngineeringBiocatalysisBiotechnology +6

SAM/BAM format v1.5 extensions for <i>de novo</i> assemblies

Peter Cock, James Bonfield, Bastien Chevreux, +1

Sequence verification of synthetic DNA by assembly of sequencing reads

Mandy Wilson, Yizhi Cai, Regina Hanlon, +5

Nucleic Acids Research

Gene Synthesis ProjectEngineeringGeneticsDna AnalysisMolecular Biology +18